PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012813
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 349aa    MW: 38858.1 Da    PI: 4.644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012813genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-102763161055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR+riN+++ +L+ l+P+      +K++ +++Le+Av+Y+k Lq
  DCAR_012813 276 RKRRERINERLRTLQHLVPNG-----TKVDISTMLEEAVQYVKFLQ 316
                  9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.44266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-14268332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-13271329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-11272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-11275320No hitNo description
PfamPF000105.9E-8276316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDSVLLKEEW EYNSLTKMFS GDDEEADCML HFMQNFGTPS DFLSTGEATR NVAVFEEDAL  60
FYSSENANSN FYLSQDITDS RTSATNFSTG SVGFPNYFSN ISYLTPEMMN EMMPHEFVAH  120
DERDYNMNAL GDVVQDNAMC LKEEIADGRS TDLVSIKRKF EDPELSEAVK ENRVNAAASS  180
DQNPKKKTRV PRDTVKSKKN LQGKKNQQAV QINKNDAESP RAIISSRSGS CISEDDSSGS  240
QEPIGGSDAK DSALNSSGKA RAGRGAATDP QSLYARKRRE RINERLRTLQ HLVPNGTKVD  300
ISTMLEEAVQ YVKFLQLQIK LLSSDETWMY APIAYNGMDM GLYQNISP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246586.10.0PREDICTED: transcription factor bHLH85-like
SwissprotQ7XHI92e-56BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A165ZB270.0A0A165ZB27_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-42bHLH family protein