PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012791
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 340aa    MW: 37077.8 Da    PI: 10.1693
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012791genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.7e-31261318359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  DCAR_012791 261 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVDDPTMLIVTYEGEHNHS 318
                  99************************988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.7E-14211257IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.7E-33248319IPR003657WRKY domain
SuperFamilySSF1182902.22E-27253319IPR003657WRKY domain
PROSITE profilePS5081130.607254320IPR003657WRKY domain
SMARTSM007742.6E-38259319IPR003657WRKY domain
PfamPF031066.5E-27261317IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MALDLMNTIY RDNKFRSKME ENAVQEAAAA GLQSVENLIK AISQANNQNP YLSSSSSSET  60
GDTDYRAVTD VAVNKFKKFI SLLDRNRTGH ARFRRGPVVE KTGAEVQNQN QNHGSDGFQV  120
YRPTAVHPVQ TVQPVQTVQP VQLVQPVQRL PPVPKKENVS TTINFAAPAV AAAAPATSFM  180
SSLTGDTDGS GFQITNMSGF SSGSRPVSSL KRKCSSMNDV TAKCSGSSSG RCHCPKKKKL  240
RVKKVVRMPA ISMKTSDIPP DDFSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERA  300
VDDPTMLIVT YEGEHNHSQS PNENTNTSHI LESDGPKQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-212573221276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPCU568340.0U56834.1 Petroselinum crispum DNA binding protein WRKY3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243851.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX07e-86WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A165ZBV30.0A0A165ZBV3_DAUCS; Uncharacterized protein
STRINGXP_009604893.11e-130(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-75WRKY DNA-binding protein 7