PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_012775

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 333aa MW: 37227.7 Da PI: 4.5469

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012775	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	230	253	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C+k+F+ L+ Hi+ H DCAR_012775 230 FPCQLCNKTFKLEKGLECHIKAkH 253 89******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.681	230	258	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.11E-5	230	255	No hit	No description
PROSITE pattern	PS00028	0	232	253	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MKSKFWGVQV KGKKSEFVCP GNGELIRICQ IALGDENFES VEHVVVYLIV DGKKVALARL 60 SGELPQLSVD IVIETNFRLL HNWKEGRVDL CVDEAADGEG EPPASANSAP AASEPPSSAK 120 SDDSDDDHVE DFYYDEPLEK LDDEDIDKDL VDDSFGVKTP EKFDDDYLDE DQVDNFSEDE 180 TQTPEKVEFN IEVPQRTDGK KRSALTESPC PAKKLKKDTA AEIPESIAEF PCQLCNKTFK 240 LEKGLECHIK AKHEEASAGT TTSYRSKKFL KNSVELQLAC EFCNKLVHPH PYMLSFVLSF 300 LYPRLAQVFF RIFKSEAGLE DHSKAKHGER NG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017246121.1	0.0	PREDICTED: histone deacetylase HDT3-like isoform X1
TrEMBL	A0A165ZC77	0.0	A0A165ZC77_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	2e-16	histone deacetylase 2C

Link Out ? help Back to Top
Phytozome	DCAR_012775