PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012590
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 233aa    MW: 25293.3 Da    PI: 6.7796
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012590genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.42.6e-294107199
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++  p++ r+++++sl+y A+ r+ +PvyG++g++++++++l+q ++e
  DCAR_012590   4 SCNGCRVLRKGCTEDCSIRPCLqwidnPESQAHATTFLAKFYGRAGLMNLINGGPNHLRPEIFRSLLYDACGRLVNPVYGSAGLLWSGNWHLCQNAVE 101
                  6************************************************************************************************9 PP

       DUF260  94 lallke 99 
                  ++l+++
  DCAR_012590 102 AVLRGD 107
                  988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2563109IPR004883Lateral organ boundaries, LOB
PfamPF031959.8E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCTEDCS IRPCLQWIDN PESQAHATTF LAKFYGRAGL MNLINGGPNH  60
LRPEIFRSLL YDACGRLVNP VYGSAGLLWS GNWHLCQNAV EAVLRGDPIT QTVAIDAAEV  120
NNGPPHKAYD IRHNSNNHHG VKNRLRFKRS AGKELNGPIS HDSTLSHQSE AAMNGEGGSG  180
EMAEGSALFR APQDWFVPEK DNNVVEAESE EDELELTLGV KKGKSIQGGS GI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239197.11e-158PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-81LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A169WFG21e-173A0A169WFG2_DAUCS; Uncharacterized protein
STRINGXP_009607764.15e-87(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-80LOB domain-containing protein 41