PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_012478 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 143aa MW: 15587.2 Da PI: 8.142 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.4 | 7.8e-06 | 126 | 137 | 15 | 26 |
-TTTTT-SS-SS CS zf-CCCH 15 CkyGdrCkFaHg 26 Ck+G++C+FaH+ DCAR_012478 126 CKFGNKCRFAHS 137 ***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-10 | 110 | 138 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.826 | 111 | 139 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-7 | 111 | 138 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MPVPQYARSC SEYRSRLVPG SLFAANMICV EILLNDLHVF EVYGHIDALR CLYPLFTVFM 60 LCNTSGCQFG EGCHFLDYVP GGFSALGQMG NMGPGARKPA PPTYADGPAP AIKTKLCNQI 120 NTPEGCKFGN KCRFAHSILR LY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017227311.1 | 1e-46 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 4e-20 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A166CFZ0 | 1e-101 | A0A166CFZ0_DAUCS; Uncharacterized protein | ||||
STRING | VIT_13s0156g00320.t01 | 4e-26 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-10 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_012478 |