PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012422
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CO-like
Protein Properties Length: 377aa    MW: 42866.6 Da    PI: 5.9179
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012422genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-061860339
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 +  C+ +++ ++ l+C+ ++  lC  C  + H+       Ht+
  DCAR_012422 18 PSLCDFCGDLRAVLYCRADSARLCLMCDHKVHSTnqlftkHTR 60
                 678******99*********************66778877875 PP
2zf-B_box26.31.6e-0862105442
     zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42 
                    C+ +++ + ++fC + ++ lC++C  e+H+      H+++p+
  DCAR_012422  62 VLCDACNSSPSSIFCSTHGSVLCQNCDWESHRVsqstvHDRRPI 105
                  68*****************************5488899988876 PP
3CCT607.9e-21332374143
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                  R+ a++RYkeKrk+R++eK+irYesRK++AesR R+KGrF+k 
  DCAR_012422 332 RDSAITRYKEKRKSRRYEKHIRYESRKVRAESRARIKGRFAKV 374
                  899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.1531663IPR000315B-box-type zinc finger
SMARTSM003362.7E-111663IPR000315B-box-type zinc finger
PfamPF006433.3E-51760IPR000315B-box-type zinc finger
CDDcd000213.40E-52060No hitNo description
PROSITE profilePS5011910.72259105IPR000315B-box-type zinc finger
PfamPF006433.5E-662105IPR000315B-box-type zinc finger
CDDcd000213.43E-56293No hitNo description
SMARTSM003360.864105IPR000315B-box-type zinc finger
PfamPF062039.9E-16332374IPR010402CCT domain
PROSITE profilePS5101714.842332374IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MADSAEISNS SKNFEEKPSL CDFCGDLRAV LYCRADSARL CLMCDHKVHS TNQLFTKHTR  60
SVLCDACNSS PSSIFCSTHG SVLCQNCDWE SHRVSQSTVH DRRPIEGFIG CPSVAELLAT  120
FGFDELGKKK KNVLRSDGIE DSENFEFSDY LIWETPSVVS LDDLISSDGS DHNFQATGIP  180
PLPKNRNTVC GQRKEEILCQ LREMVKLEPG CDQDKQDVEP SSGYQSLVPD RACRQLYTSF  240
ESKKEPTFFP YEENTFQWYN DGHEDADESL PNTSYQSYFN TDCLVPDKDP EVDPSLHCEE  300
NKHVTPSQNP VVAEASQIFP KVAPHEFSSQ HRDSAITRYK EKRKSRRYEK HIRYESRKVR  360
AESRARIKGR FAKVDR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243284.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like isoform X2
TrEMBLA0A166CEH70.0A0A166CEH7_DAUCS; Uncharacterized protein
STRINGVIT_07s0104g01360.t011e-131(Vitis vinifera)
STRINGPGSC0003DMT4000295911e-131(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-78B-box type zinc finger protein with CCT domain