PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_012400

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NF-YB

Protein Properties

Length: 145aa MW: 16421.3 Da PI: 5.7003

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012400	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	170.9	1.4e-53	30	125	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdr+lPianv+rimk++lP+nakisk+ ket+qecvsefisfvtseasdkc++ekrkt+ngdd++wal++lGf+dy+eplk yl ++re+e ek DCAR_012400 30 KEQDRLLPIANVGRIMKQILPSNAKISKEGKETMQECVSEFISFVTSEASDKCHKEKRKTVNGDDICWALGSLGFDDYAEPLKRYLCRFREFEVEK 125 89******************************************************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.6E-52	25	140	IPR009072	Histone-fold
SuperFamily	SSF47113	2.17E-39	32	139	IPR009072	Histone-fold
Pfam	PF00808	4.7E-27	35	99	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.4E-19	63	81	No hit	No description
PROSITE pattern	PS00685	0	66	82	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.4E-19	82	100	No hit	No description
PRINTS	PR00615	4.4E-19	101	119	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MENNRVVKYN FAAAGASTTD ASGDHQDDTK EQDRLLPIAN VGRIMKQILP SNAKISKEGK 60 ETMQECVSEF ISFVTSEASD KCHKEKRKTV NGDDICWALG SLGFDDYAEP LKRYLCRFRE 120 FEVEKANHHK ASNRNEETEE LRFN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-44	30	120	2	92	Transcription factor HapC (Eurofung)
4g92_B	1e-44	30	120	2	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017240074.1	1e-105	PREDICTED: nuclear transcription factor Y subunit B-5-like
Swissprot	O82248	2e-58	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A166CE00	1e-104	A0A166CE00_DAUCS; Uncharacterized protein
STRING	XP_010269452.1	3e-66	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	3e-60	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	DCAR_012400

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]