PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

DCAR_012273

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 181aa MW: 20466.2 Da PI: 7.8261

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012273	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125	3.7e-39	6	100	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++ r da+sslv+eA+ar rdPvyG+vg i+ lq+q++ql+ +la+++ DCAR_012273 6 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQQ-----RGDAVSSLVFEANARSRDPVYGCVGAISYLQNQVSQLQMQLAVAQ 98 7*******************************************98.....*****************************************99 PP DUF260 99 ee 100 +e DCAR_012273 99 AE 100 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.101	5	101	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.2E-38	6	98	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MVGATPCASC KLLRRRCAKD CIFAPYFPPD DPHKFAIVHK IFGASNVSKM LQQRGDAVSS 60 LVFEANARSR DPVYGCVGAI SYLQNQVSQL QMQLAVAQAE ILCFQMQQQQ QQQQQDHHHQ 120 QPNNIPITTQ QMMNQDEKSL LLSTSNFDYN LLQQQYLNFS STTSNNIVMQ DPPKRESLWT 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-42	4	102	9	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-42	4	102	9	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017240648.1	1e-115	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	3e-72	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A161Y2X0	1e-131	A0A161Y2X0_DAUCS; Uncharacterized protein
STRING	Aquca_030_00227.1	4e-79	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-69	LBD family protein

Link Out ? help Back to Top
Phytozome	DCAR_012273

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]