PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012118
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 294aa    MW: 33266 Da    PI: 5.933
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012118genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000155779123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  DCAR_012118 57 YTCTFCRREFRSAQALGGHMNVH 79
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.47E-65483No hitNo description
PROSITE profilePS5015711.1575784IPR007087Zinc finger, C2H2
SMARTSM003550.00665779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEEARYWMWT KQTTANLSSE ILVSTKPSSI GDSWEEQAFA EDAAGPLGGC IWPPRSYTCT  60
FCRREFRSAQ ALGGHMNVHR RDRARLKQSP NSNTSHLVSP NSSLGFHQHP PDLVSTLVHN  120
NSEDQEIMKL PSMVPVPVTQ VMKFEEKAFS APYFSSPTMK EQQNKNSTLS PLLWSSFIAD  180
RYCNIGDCDK QEKNYNFPES KNIRDKRNYV EADLSAESLK ILICEDDKQT SANGKKDENT  240
SFKRRRLTDD ATVLFFPNTN SDKRDINGSP ESEVFEISHN SKEDLDLELR LGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-135279229superman protein
2l1o_A3e-135279229Transcriptional regulator SUPERMAN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242246KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017241092.10.0PREDICTED: uncharacterized protein LOC108213816
TrEMBLA0A166C6T50.0A0A166C6T5_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-27zinc-finger protein 10