PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011987
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 291aa    MW: 31695.4 Da    PI: 8.8825
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011987genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.8e-14114158347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qk+
      DCAR_011987 114 PWTEEEHRAFLAGLQKLGKGDWRGISRKFVTTRTPTQVASHAQKH 158
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.405107163IPR017930Myb domain
SuperFamilySSF466899.33E-17108163IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-17110162IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.2E-12111158IPR009057Homeodomain-like
SMARTSM007171.9E-11111161IPR001005SANT/Myb domain
PfamPF002492.5E-11114158IPR001005SANT/Myb domain
CDDcd001676.02E-10114159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCIA YKGNVSMATS GNIGLRLFGV QLVEMSSACS SSSVISQAFD  60
MKKSFSMDCL MSSPNSPCSS SSLVSINEVS DQACIGYLSD GLLARAQERK KGVPWTEEEH  120
RAFLAGLQKL GKGDWRGISR KFVTTRTPTQ VASHAQKHFL RQATLDKKKR RSSLFDMSNS  180
LNSKQRGLNA AQYFDLSSSF DEVHEETNLP MIDLNLSEHH NETRNQGTDS SQPAASHRHS  240
TIWPYGSRNS QTNSTTSSNP DLELKLAAPK ANDENKASES LQLTGAISVT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166170KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240262.10.0PREDICTED: myb-like protein J
TrEMBLA0A166C3E30.0A0A166C3E3_DAUCS; Uncharacterized protein
STRINGVIT_11s0016g02410.t015e-90(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33852147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-56MYB_related family protein