PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 281aa MW: 31443.2 Da PI: 5.918

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_011357	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	4.8e-09	160	207	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + +k + a +L + ++Y++sLq DCAR_011357 160 SHSLAERVRRGKINEKIKCLQDIVPGC----HKTMGMAVMLDEIINYVQSLQ 207 8***********************9....788***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.18E-16	154	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.19E-9	154	210	No hit	No description
PROSITE profile	PS50888	14.964	156	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-16	156	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-6	160	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-9	162	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MAQYTSDMQT FNSPLSLLEF DPNMDLLMNQ LMQLNPSVMH TSNSNFNSLA GFSFENFIAQ 60 VPEFPGNLAD NFPEFSEDYK NVMQESAPVA ENDFHKSKKR AALHEVESCS DNSTPQASES 120 GSKRKNSCGR GKRLKSSDKE EEKPKDVVHV RARRGQATDS HSLAERVRRG KINEKIKCLQ 180 DIVPGCHKTM GMAVMLDEII NYVQSLQNQV DFLSMKLTAA STFHDFNSDT DAFEPLQRAK 240 AYEAQKMQVL GRRGYEEVAG TQFGPLDLTF GSYPTLPYNS *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	134	KRKNSCGRGKRLK

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017240586.1	0.0	PREDICTED: transcription factor BEE 3-like
Swissprot	Q8GWK7	3e-62	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A162AKV4	0.0	A0A162AKV4_DAUCS; Uncharacterized protein
STRING	XP_007154151.1	6e-98	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3971	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	6e-62	BR enhanced expression 3

Link Out ? help Back to Top
Phytozome	DCAR_011357

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]