PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_010957

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TALE

Protein Properties

Length: 704aa MW: 76324.3 Da PI: 6.7659

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_010957	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.4e-09	511	548	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + DCAR_010957 511 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 548 664559******************************88 PP
2	BELL	95.4	5.1e-31	387	441	18	72
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +Vd+rY++y++q+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkdaia qi DCAR_010957 387 KVDRRYSHYCQQMQMVVNSFDVVMGYGAAVPYTALAQKAMSRHFRCLKDAIAAQI 441 7****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.0E-62	315	439	IPR006563	POX domain
Pfam	PF07526	2.9E-38	320	438	IPR006563	POX domain
PROSITE profile	PS50071	12.568	489	552	IPR001356	Homeobox domain
SMART	SM00389	2.0E-9	492	556	IPR001356	Homeobox domain
CDD	cd00086	3.56E-13	492	553	No hit	No description
SuperFamily	SSF46689	4.71E-17	493	559	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-28	495	558	IPR009057	Homeodomain-like
Pfam	PF05920	3.5E-18	509	548	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence Send to blast
MSQDYHHQAA GGIFSFSNGY ERSQEEQRDK VLRGQGFEPP PPLVAMDEEG GEETGGGLHG 60 YDQTAGLLSE MFNFPSGAAT ATELLQQQIS GNYHGHIMRP SSSHLHREAT GPSHENWYTG 120 NEHKSSHIVN QQHIGPSINA SDSAAAAMQL FHMNPSSARS PSPPPSTLHM LLPNPSPNPT 180 SNSLHQGFHS PGAFGPSSHQ QQFTWGTPGS TGHDAGSTST TGQLTPHHHP IIEGHGQGLS 240 LSLSSSLQHL EAAKAEEFRN AGGSGGMLFF NQGGGGPNTN SQFHNQALQL QGTEVVLGAQ 300 NQPIHHVGFR SSSSLGVVNV LRTSKYVKAA QELLEEFCSV GRGQFKKNKF PKPPNPTGSS 360 GAGTSTSSAK DPPPLSASDR IEHQRRKVDR RYSHYCQQMQ MVVNSFDVVM GYGAAVPYTA 420 LAQKAMSRHF RCLKDAIAAQ IKHSCELLGE KDAAGTSGVT KGETPRLKLL EQSLRQQRAF 480 HQMGGMLEQE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS DADKHLLARQ TGLSRNQVSN 540 WFINARVRLW KPMVEDMYQQ ESKEEGDEDE ETETNAQTPM QSSTLASTAP SFTSTPPSTT 600 VPINAPESDP SLLAINTTFS ENQPPSHLYS ASTTPLSTVT CHRRGDPEYT AAPNAEDHSN 660 NMGSTLISFG ANATGDVSLT LGLRHVGNMP EKNPFSVRDF EGC*

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence Send to blast

MSQDYHHQAA GGIFSFSNGY ERSQEEQRDK VLRGQGFEPP PPLVAMDEEG GEETGGGLHG  60
YDQTAGLLSE MFNFPSGAAT ATELLQQQIS GNYHGHIMRP SSSHLHREAT GPSHENWYTG  120
NEHKSSHIVN QQHIGPSINA SDSAAAAMQL FHMNPSSARS PSPPPSTLHM LLPNPSPNPT  180
SNSLHQGFHS PGAFGPSSHQ QQFTWGTPGS TGHDAGSTST TGQLTPHHHP IIEGHGQGLS  240
LSLSSSLQHL EAAKAEEFRN AGGSGGMLFF NQGGGGPNTN SQFHNQALQL QGTEVVLGAQ  300
NQPIHHVGFR SSSSLGVVNV LRTSKYVKAA QELLEEFCSV GRGQFKKNKF PKPPNPTGSS  360
GAGTSTSSAK DPPPLSASDR IEHQRRKVDR RYSHYCQQMQ MVVNSFDVVM GYGAAVPYTA  420
LAQKAMSRHF RCLKDAIAAQ IKHSCELLGE KDAAGTSGVT KGETPRLKLL EQSLRQQRAF  480
HQMGGMLEQE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS DADKHLLARQ TGLSRNQVSN  540
WFINARVRLW KPMVEDMYQQ ESKEEGDEDE ETETNAQTPM QSSTLASTAP SFTSTPPSTT  600
VPINAPESDP SLLAINTTFS ENQPPSHLYS ASTTPLSTVT CHRRGDPEYT AAPNAEDHSN  660
NMGSTLISFG ANATGDVSLT LGLRHVGNMP EKNPFSVRDF EGC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	2e-16	498	555	1	58	Homeobox protein Meis1
4xrs_B	2e-16	498	555	1	58	Homeobox protein Meis1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017242924.1	0.0	PREDICTED: BEL1-like homeodomain protein 2
Refseq	XP_017242925.1	0.0	PREDICTED: BEL1-like homeodomain protein 2
Refseq	XP_017242926.1	0.0	PREDICTED: BEL1-like homeodomain protein 2
Swissprot	Q9SW80	1e-164	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A162AK02	0.0	A0A162AK02_DAUCS; Uncharacterized protein
STRING	Gorai.007G207200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-139	BEL1-like homeodomain 4

Link Out ? help Back to Top
Phytozome	DCAR_010957

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]