PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_010931

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 316aa MW: 33922.4 Da PI: 8.2598

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_010931	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.3	1.7e-38	55	113	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++ l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rkn+k+ DCAR_010931 55 SNPLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNNKA 113 56789***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.4E-32	57	112	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.488	58	112	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-25	58	112	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	60	96	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MIQEVFGGNV SNHTAAEGLS VGKREASLPP PTGVLQSSST TTTTTTNPKP SSENSNPLRC 60 PRCDSSNTKF CYYNNYNLTQ PRHFCKTCRR YWTKGGALRN VPIGGGCRKN NKANISHAIS 120 SALEKPTTGK YIRSHILTSE NMLQGKASSA YLGGSDHGGL STHSLLWTSP QTSHLLALLR 180 SNQAQNPDPN YDCSNIINSV KEEGPFLNGS GGFRLDPYSN NLNNQQQSGG FIGQNLNNQD 240 QVCDQRASFK SAENYYSDNY AAANLLMGSG HTPSANCSDI LESTPVLGGG HQLVGCWNNA 300 SLSRPELPTT DGAYH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017238546.1	0.0	PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBL	A0A161XZD0	0.0	A0A161XZD0_DAUCS; Uncharacterized protein
STRING	POPTR_0007s11620.1	4e-56	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	4e-34	Dof family protein

Link Out ? help Back to Top
Phytozome	DCAR_010931