PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_010881 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 1150aa MW: 129640 Da PI: 7.9752 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.9 | 1.7e-08 | 269 | 289 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lCr+f+ G C++Gd+C+F H+ DCAR_010881 269 LCRDFSV-GMCRRGDQCRFLHD 289 9******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.845 | 264 | 291 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 265 | 290 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 266 | 289 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-5 | 268 | 289 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-6 | 268 | 290 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.57 | 353 | 378 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.718 | 353 | 379 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1150 aa Download sequence Send to blast |
MSGRKRKSLW DSKEETENSV EFGKHDARHG REIHSSHHAK WSDVEAKNAS NSNNGSRWSS 60 SEIWQDNNGR KDYNEMPKTE RAGDGDKSYS RSPGLTGRGK HNHSPPSEIY WSQSHRYQRS 120 RSSSRSKGRA GSRSRSRSRG RDREMDKDTE GIQSWSSGRD RGMDKDTHDI RSWSRGRDRD 180 MDKDTEYIQS RGRDRDMDRD TNDTRSWSRG RDRDMDRDID GIRSWGRGRD RDVDKDRDTN 240 WSRSTLSDHR REYNGMGDRK SVVRASSQLC RDFSVGMCRR GDQCRFLHDD NLNLSHEKLE 300 RERAEFRGRH ETNEAFSADN GRPRYRTLDK VSNYDRSNRS SSFDHDHRRQ PYKNVNIPCK 360 YFAMGRCHRD DCRFSHDHPG GGAVKEKLQY DRYDQHADDE NTYWNGPKWG DAHGVSDMNN 420 NDRNNLDTRK TNYVDRTAKK QASGILDQDW KDEKITWDGP TWEHVTSVSD VARPNQWVDS 480 NAGGVSFPEP PVARTKTDER CGNSMDLWNR TQNGSNTKNV DTVESTHVAT FDGGVWVDAQ 540 GSHVQTAGGS SLQTCEKVIE GASTQQLINN VGHPLVSENS YVQQSDGMRG NNIMPNDNSN 600 AVKGVNISGN TRQFLLPEQI LNHNSGSSIS MPSNINEADQ RNVIPVSPVD GHEADPNRSD 660 KQLLYPNQQD ESKNFFKDCT NKQQVFESEV CQVDPSLPQN DMTNYQVAAI TNLSASLNEI 720 FSNGKQLPEL YAVLNPKSST DLLTSLSCSA SVNSSVAATI GQPNQTTMFQ GQHVPIGAIE 780 LGKHDRTDVS DEQRNHGTDS KHCEEKPAPF ENTRSSTDRI TEGANNNKIY ELGEPKPLDQ 840 FLLPSINGPD PGKIEKIGST EKAFSPTEKL LKPDINIAAH QNVSVKSESC KPEEGIPFDN 900 ANPEGRVREG NSGKDEKEMR LFKVALVEYV KEILKPVWKE GQMSREVHKS IVKKVVDKVT 960 GTIQGGHIPK TQEKVDQYLA CSKPKLTKLV QMPSINGPDP GKIEKIGSTE KAFSPTEKLL 1020 KPDINIAAHQ NVSVKSESCK PEEGIPFDNA NPEGRVREGN SGKDEKEMRL FKVALVEYVK 1080 EILKPVWKEG QMSREVHKSI VKKVVDKVTG TIQGGHIPKT QEKVDQYLAC SKPKLTKLVQ 1140 AYTERLLKS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 140 | RSRSRSRGR |
2 | 132 | 142 | RSRSRSRGRDR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017241780.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1 | ||||
Refseq | XP_017241781.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X2 | ||||
TrEMBL | A0A161XZ95 | 0.0 | A0A161XZ95_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5255 | 20 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-19 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_010881 |