PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010770
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 303aa    MW: 33436 Da    PI: 6.1756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010770genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.9e-13121168355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+r+ + f +L +l+P +     kK +Ka++L +A +YIk+Lq
  DCAR_010770 121 QDHVIAERQRRERLSQMFIQLSSLVPGL-----KKIDKASVLGEAANYIKQLQ 168
                  6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.542118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-11121168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14122178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.16E-12123172No hitNo description
SuperFamilySSF474592.22E-16123178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDDPMIVTSH QSQMSSMEES RYSASLSPQG GTPPPGDSSR SFFRSEDNSR LGTTPAPKML  60
KTAAKMIPKP SSTIISFHNA TSATTQYNDD HGNDISSVLM GMISEGSRKA SATTRNPLQA  120
QDHVIAERQR RERLSQMFIQ LSSLVPGLKK IDKASVLGEA ANYIKQLQGR VKALEEKMIE  180
KDGEAIVSVE RFRLHTDEDQ SSSSGDDNFA DHNEESIPEI EVRLSETDVF LRIQCQKIPG  240
LAVKMLSDIE KLHMTIVSSS VMPFASNSLL ITVIAQMNME FCMTADDLMK RLQFTALKLR  300
CS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240984.10.0PREDICTED: transcription factor bHLH18-like isoform X1
TrEMBLA0A166AW890.0A0A166AW89_DAUCS; Uncharacterized protein
STRINGEOX918222e-60(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-50bHLH family protein