PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010769
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 303aa    MW: 33198.7 Da    PI: 6.0557
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010769genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.9e-13122169355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+r+ + f +L +l+P +     kK +Ka++L +A +YIk+Lq
  DCAR_010769 122 QDHVIAERQRRERLSQMFIQLSSLVPGL-----KKIDKASVLGEAANYIKQLQ 169
                  6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.542119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-11122169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-15123179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16124179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-12124173No hitNo description
SMARTSM003534.2E-14125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDDPMIVTSH QSQMSSMEES RYSASLSPQR GTPPPGDSSS SFFRSEDNSR LGTTPAAKML  60
KTAGKMIPKP SASTTIISFH NATSATAQYN EDGGNDISSV LGMISEGSRK ASATTRNPLQ  120
AQDHVIAERQ RRERLSQMFI QLSSLVPGLK KIDKASVLGE AANYIKQLQG RVKALEEQMI  180
EKDGDAIASV ERFRLHTDEE SSSSGDDFFA DYNNESLPVI EVRLSETDVF LRIQCQKFPG  240
LAVKMLSDIE KLHTTIVSSS VMPFASNSLL ITVIAQMNME FCMTADDLMK RLQLTALKLR  300
CS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017241141.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A161WTJ50.0A0A161WTJ5_DAUCS; Uncharacterized protein
STRINGEOX918227e-59(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-45bHLH family protein