PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010045
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 615aa    MW: 69340.1 Da    PI: 6.4398
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010045genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.2e-07549604147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      r++W  eE+e l++ v+++ +       W +I ++      ++Rt+ ++k++w + 
      DCAR_010045 549 RLAWKVEEEEMLKKTVQKYSKTvniklPWQKILEEGRvvfdETRTPTDLKDKWKNI 604
                      799*****************99*************99****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.1E-81164IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.109.1E-91366IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002493.7E-61560IPR001965Zinc finger, PHD-type
PROSITE patternPS0135901659IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.0E-8543608IPR009057Homeodomain-like
PROSITE profilePS500908.351544605IPR017877Myb-like domain
SuperFamilySSF466891.64E-7547606IPR009057Homeodomain-like
SMARTSM007170.0035548607IPR001005SANT/Myb domain
CDDcd116602.92E-7552605No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MDEAVHINKF HWMDLCIKCD KGGKLLTCHQ NGCPVVVHED CLGSEAQFDD IGNFYCPYCV  60
YKQATEDFTR AQREVVLAEK VLSKYLDGEG LGTEAFGTVN VTKSSDVGNW RVELEKDCHQ  120
MTGRGCIIGD HEADVNKESD VLLNRFGDDG RISDDINRVK SLEKQNELEG GVSRCGDECC  180
SGGGQVDQQN MDRRCQSGDK IQYDAILTDT PSKQHQDAGH LEAHKIMKES VEAVEESEET  240
MDEIQNQEQA HKSGRCQSGD KIQYDAILTD TPSKQHQDAG HFESHKIMKE SVEAVEESEE  300
TMYEIPNQEQ AHKTTEKIMC KESAPQVHTE AKRKVGDTTA STCMDNNTIS EKVIGAQPPG  360
VNAPSRSLRK NKSVHIEKGS TRCKPSKVAT PPTIFTKLPA LKEKRKRLAW KVEEEEMLKD  420
TRHFEAHKIM KESVEAVEES EETMDEIQNQ EQAHKTTEKI MCKESAPQVH TEAKRKVGDT  480
TASTCMDANT ISEKLNEAET PGVNTPRRSP RNKKSVHIEK GSTPCKPSKV AKPPTIFTKL  540
PTHKEKRKRL AWKVEEEEML KKTVQKYSKT VNIKLPWQKI LEEGRVVFDE TRTPTDLKDK  600
WKNILSKEPR FKIS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237273.10.0PREDICTED: uncharacterized protein LOC108210479 isoform X1
RefseqXP_017237274.10.0PREDICTED: uncharacterized protein LOC108210479 isoform X1
TrEMBLA0A162AI780.0A0A162AI78_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-08MYB_related family protein