PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009975
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 338aa    MW: 37569.2 Da    PI: 7.2342
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009975genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.6e-53161431128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeelv +yLkkk+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vls+ ++
  DCAR_009975  16 LPPGFRFHPTDEELVLHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLSSgGT 112
                  79****************************.88***************999999****************************************9777 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+kk Lvfy gr pkg k++W+mheyrl
  DCAR_009975 113 QKVGVKKALVFYGGRPPKGIKSNWIMHEYRL 143
                  88***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-6410180IPR003441NAC domain
PROSITE profilePS5100561.94316180IPR003441NAC domain
PfamPF023659.6E-2817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MESTDSSGGS QQQPQLPPGF RFHPTDEELV LHYLKKKAAS APLPVAIIAE VDLYKFDPWE  60
LPAKASFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLSSG GTQKVGVKKA  120
LVFYGGRPPK GIKSNWIMHE YRLADNNKST NMKPPGCDIA NNKKGSLRLD DWVLCRIYKK  180
NNSQRPLMEH ESCDSMGDMI LGSIKSEPCV QIGQQHPKLP GSYGAMLENE QSMLQSAPNL  240
ASLMSMKRGL FWEEDGGPSL ANKRFLTADH QNDEEGKTVQ DDNGSISMAS FLGQFPQSTQ  300
ADEAMHQQGP MLGNLGDGAY REQHNFNQLQ SNMNWYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-731318314168NO APICAL MERISTEM PROTEIN
1ut4_B3e-731318314168NO APICAL MERISTEM PROTEIN
1ut7_A3e-731318314168NO APICAL MERISTEM PROTEIN
1ut7_B3e-731318314168NO APICAL MERISTEM PROTEIN
3swm_A3e-731318317171NAC domain-containing protein 19
3swm_B3e-731318317171NAC domain-containing protein 19
3swm_C3e-731318317171NAC domain-containing protein 19
3swm_D3e-731318317171NAC domain-containing protein 19
3swp_A3e-731318317171NAC domain-containing protein 19
3swp_B3e-731318317171NAC domain-containing protein 19
3swp_C3e-731318317171NAC domain-containing protein 19
3swp_D3e-731318317171NAC domain-containing protein 19
4dul_A3e-731318314168NAC domain-containing protein 19
4dul_B3e-731318314168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240671.10.0PREDICTED: NAC transcription factor 56-like
SwissprotQ8GY421e-103NAC25_ARATH; NAC transcription factor 25
SwissprotQ9LD441e-103NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A162AI210.0A0A162AI21_DAUCS; Uncharacterized protein
STRINGcassava4.1_022751m1e-138(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-104NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]