PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_009965

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 393aa MW: 42306.2 Da PI: 7.8555

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_009965	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.3e-05	282	320	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq DCAR_009965 282 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 320 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.42	270	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.72E-11	280	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.76E-5	280	324	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.7E-9	284	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MESANLHYKH QQQQQLGDES SSPFDAPPFY QVEASRAAWS PNTILSNGEF NPNVNVPPMT 60 QEMDFGSSFA TLSAHDQVQL ARIKEELSSS SVHHSDYPRF TDITFSSGCQ INGFQLPAAA 120 GGGVGGFYSS PPQKYYCPTS ATSVARGTFS QILPTINISE LTQTAASSNS SLMSSSSLSM 180 NLESLDLFNS TRFSAGYSQS PHDHLGLFKT SLPYSLQNMQ LQLSPGRPSS CPTNVTSSSP 240 FHNNGVSEVK RPSSSLETKP PQAAPKKSRL DSRSSCPPFK VRKEKLGDRI AALQQLVAPF 300 GKTDTASVLM EAIGYIKFLQ NQVETLSVPY MKSSRNRTKK TQGGLGDGNG EEAEGMRDLR 360 TRGLCLVPLS CLSYVTDGGG GVWPPPNFSG FS*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MESANLHYKH QQQQQLGDES SSPFDAPPFY QVEASRAAWS PNTILSNGEF NPNVNVPPMT  60
QEMDFGSSFA TLSAHDQVQL ARIKEELSSS SVHHSDYPRF TDITFSSGCQ INGFQLPAAA  120
GGGVGGFYSS PPQKYYCPTS ATSVARGTFS QILPTINISE LTQTAASSNS SLMSSSSLSM  180
NLESLDLFNS TRFSAGYSQS PHDHLGLFKT SLPYSLQNMQ LQLSPGRPSS CPTNVTSSSP  240
FHNNGVSEVK RPSSSLETKP PQAAPKKSRL DSRSSCPPFK VRKEKLGDRI AALQQLVAPF  300
GKTDTASVLM EAIGYIKFLQ NQVETLSVPY MKSSRNRTKK TQGGLGDGNG EEAEGMRDLR  360
TRGLCLVPLS CLSYVTDGGG GVWPPPNFSG FS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017238860.1	0.0	PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH110
TrEMBL	A0A162AI11	0.0	A0A162AI11_DAUCS; Uncharacterized protein
STRING	VIT_18s0001g12970.t01	1e-116	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7533	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	9e-60	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_009965