PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_009635

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 295aa MW: 33289.3 Da PI: 8.1262

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_009635	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.5	3.2e-33	15	89	54	129
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + kewyf+s rd+kyatgkr+nrat sgyWkatgkd++v++ k++lvg++ktLvfy+grapkg+kt+Wvmhe+rle DCAR_009635 15 GGKEWYFYSLRDRKYATGKRTNRATISGYWKATGKDRPVCR-KRRLVGMRKTLVFYQGRAPKGKKTNWVMHEFRLE 89 578***********************************9.999**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.636	1	110	IPR003441	NAC domain
SuperFamily	SSF101941	2.22E-37	12	111	IPR003441	NAC domain
Pfam	PF02365	2.8E-14	18	88	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MNLFFIDTTD SACVGGKEWY FYSLRDRKYA TGKRTNRATI SGYWKATGKD RPVCRKRRLV 60 GMRKTLVFYQ GRAPKGKKTN WVMHEFRLEE PSGITISSKE DWVLCRVFHK NKEASNDSPK 120 QDIQNDGSWY NQETNISNIP ASNHLPPLMD SYISFNQNHS HSHPQVPCFS NIYTTNNIHT 180 NPNHVTTLPI ITNNVQLPLQ NKPIISSGSA SYLGNYSANT SSSCDNKMVR DEAIDHYLAK 240 IGDNVNADYT GMDIPPPCDV MMMIKDSPMS FGEGSSESFL SEVGFPSISW NDQY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-34	10	116	64	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-34	10	116	64	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-34	10	116	64	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-34	10	116	64	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-34	10	116	67	174	NAC domain-containing protein 19
3swm_B	1e-34	10	116	67	174	NAC domain-containing protein 19
3swm_C	1e-34	10	116	67	174	NAC domain-containing protein 19
3swm_D	1e-34	10	116	67	174	NAC domain-containing protein 19
3swp_A	1e-34	10	116	67	174	NAC domain-containing protein 19
3swp_B	1e-34	10	116	67	174	NAC domain-containing protein 19
3swp_C	1e-34	10	116	67	174	NAC domain-containing protein 19
3swp_D	1e-34	10	116	67	174	NAC domain-containing protein 19
4dul_A	1e-34	10	116	64	171	NAC domain-containing protein 19
4dul_B	1e-34	10	116	64	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017241451.1	0.0	PREDICTED: NAC domain-containing protein 21/22
TrEMBL	A0A162AH98	0.0	A0A162AH98_DAUCS; Uncharacterized protein
STRING	PGSC0003DMT400056916	2e-76	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.1	6e-65	NAC domain containing protein 1

Link Out ? help Back to Top
Phytozome	DCAR_009635