PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

DCAR_009538

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

MYB_related

Protein Properties

Length: 304aa MW: 34142.3 Da PI: 6.1777

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_009538	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.6	5.7e-13	14	62	1	46
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT..TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg..kgRtlkqcksrwqk 46 +g+W++eEd l+ ++++ G+g +W + ++++ gRt++++k++w++ DCAR_009538 14 KGPWSPEEDATLKSYIEENGTGgNWIALPQKIAqlPGRTDNDIKNYWNT 62 79*******************78777777777778********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-19	5	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.56E-12	8	70	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.952	9	68	IPR017930	Myb domain
SMART	SM00717	1.5E-10	13	66	IPR001005	SANT/Myb domain
Pfam	PF00249	9.7E-12	14	62	IPR001005	SANT/Myb domain
CDD	cd00167	1.65E-10	16	64	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWSPE EDATLKSYIE ENGTGGNWIA LPQKIAQLPG RTDNDIKNYW 60 NTRLKKKLLG KQRKEVQARR DHAIQKQQEM MMKKKVMENQ GASEMLPDCH NLNQSPYWPD 120 LAVLPPIPYS NQEPRFNDHT SFRKLLINLG GRFSDHNPDH STLNPDLIVD PQFQTSGTIS 180 SVQPPLTIKS SHLEALNSNN ISQLPNNNHC NISDQAEGST FPGEFIEEML YTIPPRHDGL 240 EFLYGDTRFS TNGELSMDWG EMSSLSYLPP VDHSSCETAL HQPTSTMQKV GFEGLRYMGS 300 DAQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	4e-33	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	4e-33	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017240705.1	0.0	PREDICTED: transcription factor RAX3-like
TrEMBL	A0A166A640	0.0	A0A166A640_DAUCS; Uncharacterized protein
STRING	POPTR_0002s11440.1	4e-76	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	7e-34	myb domain protein 84

Link Out ? help Back to Top
Phytozome	DCAR_009538