PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009404
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 400aa    MW: 43701.3 Da    PI: 8.1624
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009404genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.21.8e-10117138426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  ++C+++++ G C+yGdrCkF H+
  DCAR_009404 117 KICNYWMQ-GNCSYGDRCKFLHC 138
                  68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.9063258IPR000571Zinc finger, CCCH-type
SMARTSM003560.0533357IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324113140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6114137IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6115139IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-8117138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-7117135IPR000571Zinc finger, CCCH-type
SuperFamilySSF509786.02E-38130391IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.105.8E-35136390IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.3E-5143182IPR001680WD40 repeat
PfamPF004003.2E-4146182IPR001680WD40 repeat
PROSITE profilePS5029414.635150359IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.55150191IPR001680WD40 repeat
PRINTSPR003207.3E-5169183IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780169183IPR019775WD40 repeat, conserved site
SMARTSM0032014222259IPR001680WD40 repeat
PRINTSPR003207.3E-5246260IPR020472G-protein beta WD-40 repeat
SMARTSM003200.028266303IPR001680WD40 repeat
PfamPF004000.19272302IPR001680WD40 repeat
PROSITE profilePS500829.907273312IPR001680WD40 repeat
PRINTSPR003207.3E-5290304IPR020472G-protein beta WD-40 repeat
SMARTSM003201.1307350IPR001680WD40 repeat
SMARTSM003201353390IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDVDGSKRVF QRLGPSSSNS NTNSNNSSFN KNKSQQVCYH WRAGKCNRYP CPFLHRELPM  60
PPQQQQSRMG NGGAGSLSSK RPYGFADDQA NMPRRNSNFN NTWGRSQGGG VARKMEKICN  120
YWMQGNCSYG DRCKFLHCWC TNAFTLLTQL QGHQKVVSGI ALPSGSDKLY TGSKDETVRV  180
WDCQSGQCGA VINLAGEVGC MLNEGPWIFV GLPNIVKAWN AQTATDLNLD GPVGQVYSLV  240
VGNDLLLAGT QDGTILAWRY NAVANSFEPA AQLKGHNLAV ITLVVGANKL YSGSMDKSIR  300
VWAATDSGNL EVTYTHTEEH GVLTLCGMHD AEAKPVLLCS CNDNTIRVYD LPSFSERGKL  360
YSKEEVRCMQ LGPGGLFFTG DGTGEVRVWK WLAEPTATP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-131363898320Tako8
6g6n_A2e-131363898320Tako8
6g6n_B2e-131363898320Tako8
6g6n_C2e-131363898320Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017242680.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ21e-179C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A166A2570.0A0A166A257_DAUCS; Uncharacterized protein
STRINGXP_009626305.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-177C3H family protein