PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_009130

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Protein Properties

Length: 199aa MW: 22760.6 Da PI: 5.2222

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_009130	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33	1.1e-10	51	92	53	95
EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 + +s++yv+t+ W++Fvka +L++gD+v+F+ ++ s+ e++++ DCAR_009130 51 DVGSRSYVFTGAWNKFVKAYELQAGDSVLFY--KNySGDECFFG 92 788999*************************..44455555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	4.17E-7	49	96	No hit	No description
SuperFamily	SSF101936	2.35E-8	50	83	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	7.9E-8	51	92	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.0E-8	54	90	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MMCYDTSLNC NACLSPPHKR QRLEKDAVIA IHDGEYHARE FLFKKVLAKS DVGSRSYVFT 60 GAWNKFVKAY ELQAGDSVLF YKNYSGDECF FGIEVRYAGA RNIVGSVTKN LNNVEEFMND 120 DTIRVKEERE VSASEPKEKD FQLFGVRIKR ASTDFQGGRS IDVIKEEEDY LVHKADCRRV 180 KEEEEEFEGL KVDLNLSL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ149221	7e-46	FJ149221.1 Daucus carota subsp. sativus clone BAC C121C04 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017233805.1	1e-113	PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBL	A0A165ZSN3	1e-144	A0A165ZSN3_DAUCS; Uncharacterized protein

Link Out ? help Back to Top
Phytozome	DCAR_009130