PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008867
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 434aa    MW: 49252 Da    PI: 6.6304
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008867genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.51.9e-073543862254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   +yp++e++++L +++gL+ +q+ +WF N+R +
  DCAR_008867 354 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 386
                  59*****************************87 PP
2ELK30.21e-10307328122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++++++++E++
  DCAR_008867 307 ELKHELKQGYKSKIVDIREEIL 328
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.6E-18125169IPR005540KNOX1
PfamPF037901.2E-16127168IPR005540KNOX1
SMARTSM012562.0E-10180250IPR005541KNOX2
PfamPF037911.2E-4221249IPR005541KNOX2
SMARTSM011883.4E-4307328IPR005539ELK domain
PROSITE profilePS5121310.092307327IPR005539ELK domain
PfamPF037893.9E-7307328IPR005539ELK domain
PROSITE profilePS5007111.677327390IPR001356Homeobox domain
SMARTSM003897.6E-11329394IPR001356Homeobox domain
SuperFamilySSF466899.41E-16329394IPR009057Homeodomain-like
CDDcd000862.03E-11330391No hitNo description
Gene3DG3DSA:1.10.10.606.6E-25334391IPR009057Homeodomain-like
PfamPF059201.2E-17347386IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MSFHEDHISQ AMELHHYTDN VSNFQSMLPD DHHLSDHSSP PSEISGKPVP TWLNNAILRQ  60
QNHHYTANGS NFLHLQTTNS GSSSNQWLSR EVHPSSEAMI VMNNQEKKLE SHENQESGEG  120
EWRNAKYKAD ILGHPLYDQL LSAHVSCLRI ATPVDQLPRI DAQLEQSQQV VAKYSMLQQS  180
SSQPLDGKDL DQFMVRCKQI SRTQYIPLRT GSGNILFLKL DQLQQHVRVH AMEAVMACWE  240
LEQSLQSLTG VAPGEGTGAT MSDDDEDHYD TETNLFDGSL DGPDSMGFGP LVPTESERSL  300
MERVRQELKH ELKQGYKSKI VDIREEILRK RRAGKLPGDT TSLLKAWWQS HSKWPYPTEE  360
DKARLVQETG LQLKQINNWF INQRKRNWHS NPSSSTSTKS KRKRSLLRAV DSDTVLISGR  420
TNLDLLCFHS ISP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383403RKRNWHSNPSSSTSTKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243439.10.0PREDICTED: homeobox protein knotted-1-like LET12
SwissprotP480001e-158KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A162AEW20.0A0A162AEW2_DAUCS; Uncharacterized protein
STRINGVIT_11s0118g00800.t011e-178(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-154KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]