PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008464 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | YABBY | ||||||||
Protein Properties | Length: 232aa MW: 25384.6 Da PI: 7.8663 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 216.9 | 6.2e-67 | 22 | 190 | 5 | 169 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....lleelkveeenlksnvekeesasts.vs 97 ssseq+Cyv+Cn C+t+lavsvP +slfk+vtvrCGhC++ll n++ aa ++l+ +++ +e +n+ ++++ a ++ + DCAR_008464 22 SSSEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCSNLLPANMRGLLLPAAAPDQLQFPHSFFfppsTHHNFLDEIRNTAPDLVSNQLAISDfSP 119 689*********************************************99999999998753221122346666656655555555444444444044 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 s+ + +e pr+p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafs+aaknWahfP+i fg DCAR_008464 120 SSGIGL-GFDEHPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSTAAKNWAHFPHIQFG 190 444444.45677999********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.8E-67 | 23 | 190 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 8.38E-8 | 135 | 185 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.9E-4 | 140 | 184 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MFSPNSNSPS VPSSLNHHLP SSSSEQLCYV HCNICDTVLA VSVPCSSLFK TVTVRCGHCS 60 NLLPANMRGL LLPAAAPDQL QFPHSFFFPP STHHNFLDEI RNTAPDLVSN QLAISDFSPS 120 SGIGLGFDEH PRPPAINRPP EKRQRVPSAY NRFIKDEIQR IKAGNPDISH REAFSTAAKN 180 WAHFPHIQFG INLMHSDQAT FKKTTATSTV RQQGNADDTT LAKDCFPTPA I* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017234120.1 | 1e-171 | PREDICTED: protein YABBY 4-like | ||||
Swissprot | Q01JG2 | 4e-65 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 4e-65 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A166FCV9 | 1e-169 | A0A166FCV9_DAUCS; Uncharacterized protein | ||||
STRING | XP_002532573.1 | 2e-88 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-57 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008464 |
Publications ? help Back to Top | |||
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