PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008020
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 729aa    MW: 81085.2 Da    PI: 4.9006
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008020genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.9e-07240260526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ffa+ G+C  G +C+F H+
  DCAR_008020 240 ICDFFAQ-GWCIKGKSCRFLHV 260
                  6******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.371235262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6235259IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4240260IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MPSPVSNHRP AAIDNQSESD HQSLADDEEY EEIEVEEETE VEEDETDDND EDEEEEDDFG  60
EVLSPINQDQ TRDASPDNVI LEHEDQSHPV LLTQENAVNV KSTDMHEVEG DKELGKDVVA  120
TGDHKYIEPN PHSRSRTYKD DVEQKNTALP NGNGILTAQT IESARSAGAE SSAAVSMKDN  180
LGGKTTALYY SEEKKKQSLQ NEDFKLNETR FSRLEIPTLK PSSLSPGVEF KAGTDKPAII  240
CDFFAQGWCI KGKSCRFLHV SNKTTQQHSG AEADASHKTE RRTSEGSDCS SKKPRLATSP  300
DEVAPAVSRS LDRLLSHELG QSLKWKNESE EASPYKDNSS SAGREYLRGE NWYLNNHGKH  360
GSEELAATRS QFTLDERMPP LRRSWEANFN SGKLPPTHVP SWTKSSLPFG STWNLDPLKS  420
HKCLDVEREY GASRSASLQK TPSPFSGSES NNPSRMPVSG DSQHPAGYKT EVPSFRWEVS  480
APFRPSFDLT KRLLSSVYQY DPIRDSIEQS NLADVYSRFS GAGQESIVSG YNVGEQSFGR  540
NQNILDSNLN KINYGKDLFS AETGTPLSAI TEMQNKVAAP KEEKLLESLY IQDIKKRNTP  600
NTENDEYATQ TDSSRQKLKS GDMAGRISEM EVGVKVSEDI AKETKALKHF RAALIEFVKE  660
LVKPTWREGN LSKDAHKTIV KRAVDKVLST IPAHQIPFTS EAVDLYLSSS QSKISKLVEG  720
YIDKYGKI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017235398.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
RefseqXP_017235399.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
TrEMBLA0A162AXB90.0A0A162AXB9_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30042122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-24C3H family protein