PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_007624

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 290aa MW: 33287.4 Da PI: 4.9712

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_007624	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.4	1.6e-40	49	148	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k+++ l++ ++++am++++y++++ra+dPv G++++i++lq+q+e +ael+l+ DCAR_007624 49 ACAACKYQRRKCAPDCILAPYFPHDRQQQFLNAHKLFGVSNITKIIRYLDQPDKDEAMRTIIYQSDVRANDPVGGCYRIIRELQRQIEYNRAELQLVL 146 7*********************************************************************************************9987 PP DUF260 99 ee 100 ++ DCAR_007624 147 HQ 148 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.849	48	149	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-37	49	145	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MNTNTNVNKT HNNNNNFIYN NKSTPPSSTP TPAPAATNNN IIRSNGNQAC AACKYQRRKC 60 APDCILAPYF PHDRQQQFLN AHKLFGVSNI TKIIRYLDQP DKDEAMRTII YQSDVRANDP 120 VGGCYRIIRE LQRQIEYNRA ELQLVLHQLA YCRAQNQHNV NLLHSNNSGS FEHMMATNHN 180 DDVQQHYQER DDQVQQPDGQ DQQEYVLQNG DEDCDQVQFE EINSWEGTEN SLALEVKKDC 240 DAGAENSQED VHVKPDLDDN DKREELRYEV EEKSFDSVNK FRLKTTPAI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-26	45	142	7	104	LOB family transfactor Ramosa2.1
5ly0_B	4e-26	45	142	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017233648.1	0.0	PREDICTED: LOB domain-containing protein 22
Swissprot	Q9LRW1	2e-54	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A166ENI7	0.0	A0A166ENI7_DAUCS; Uncharacterized protein
STRING	cassava4.1_028597m	9e-69	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9926	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	8e-56	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	DCAR_007624

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]