PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_007624 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | LBD | ||||||||
Protein Properties | Length: 290aa MW: 33287.4 Da PI: 4.9712 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.4 | 1.6e-40 | 49 | 148 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k+++ l++ ++++am++++y++++ra+dPv G++++i++lq+q+e +ael+l+ DCAR_007624 49 ACAACKYQRRKCAPDCILAPYFPHDRQQQFLNAHKLFGVSNITKIIRYLDQPDKDEAMRTIIYQSDVRANDPVGGCYRIIRELQRQIEYNRAELQLVL 146 7*********************************************************************************************9987 PP DUF260 99 ee 100 ++ DCAR_007624 147 HQ 148 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.849 | 48 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-37 | 49 | 145 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MNTNTNVNKT HNNNNNFIYN NKSTPPSSTP TPAPAATNNN IIRSNGNQAC AACKYQRRKC 60 APDCILAPYF PHDRQQQFLN AHKLFGVSNI TKIIRYLDQP DKDEAMRTII YQSDVRANDP 120 VGGCYRIIRE LQRQIEYNRA ELQLVLHQLA YCRAQNQHNV NLLHSNNSGS FEHMMATNHN 180 DDVQQHYQER DDQVQQPDGQ DQQEYVLQNG DEDCDQVQFE EINSWEGTEN SLALEVKKDC 240 DAGAENSQED VHVKPDLDDN DKREELRYEV EEKSFDSVNK FRLKTTPAI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-26 | 45 | 142 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-26 | 45 | 142 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233648.1 | 0.0 | PREDICTED: LOB domain-containing protein 22 | ||||
Swissprot | Q9LRW1 | 2e-54 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A166ENI7 | 0.0 | A0A166ENI7_DAUCS; Uncharacterized protein | ||||
STRING | cassava4.1_028597m | 9e-69 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9926 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 8e-56 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_007624 |
Publications ? help Back to Top | |||
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