PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_007559

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Trihelix

Protein Properties

Length: 384aa MW: 44090.3 Da PI: 4.4694

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_007559	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.2	3.7e-17	151	235	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+qe+ +L+ea ++ + +r++l+ W+ev++k+ ++ ++ers +qC+++++ l+k+ykk+++ + +++s+++yf++++ DCAR_007559 151 WTEQETFVLLEAWGDRFIQRGRKSLRSEEWQEVADKVsQRSKLERSDTQCRNRLDTLKKKYKKETAKIHEM-GGTTSQWVYFEKMD 235 ***********************************778899******************999986.78888******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.423	149	208	IPR017877	Myb-like domain
Pfam	PF13837	4.3E-22	150	237	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MDETEDPYAA TQGFEPSPRS KLAVCDASYS QNVDDQYVEG DDDPEVDEED EEEGIDVNEE 60 ATILTNAKVE DVNDEDDVVD EDGDEQSDDD NSDDDYRRRI ESNDQHRHPK KRKMMSLLSS 120 YEFAPRVTAP LALTSAASKP SHGGRNALSD WTEQETFVLL EAWGDRFIQR GRKSLRSEEW 180 QEVADKVSQR SKLERSDTQC RNRLDTLKKK YKKETAKIHE MGGTTSQWVY FEKMDMLLSL 240 TPQQLRLSRE VNTLNSKKHV QNPGVYLNRA CRSDEMSDSS ENSDSVEAEE NGSNFRPPKQ 300 TNRSVGASFR LIAESITKFS DIYVKVENNK RKQMLELEMM RMNFHRDLEM QKRQILEKAR 360 AEIANIWRED DNWNSGSAEN LSG*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MDETEDPYAA TQGFEPSPRS KLAVCDASYS QNVDDQYVEG DDDPEVDEED EEEGIDVNEE  60
ATILTNAKVE DVNDEDDVVD EDGDEQSDDD NSDDDYRRRI ESNDQHRHPK KRKMMSLLSS  120
YEFAPRVTAP LALTSAASKP SHGGRNALSD WTEQETFVLL EAWGDRFIQR GRKSLRSEEW  180
QEVADKVSQR SKLERSDTQC RNRLDTLKKK YKKETAKIHE MGGTTSQWVY FEKMDMLLSL  240
TPQQLRLSRE VNTLNSKKHV QNPGVYLNRA CRSDEMSDSS ENSDSVEAEE NGSNFRPPKQ  300
TNRSVGASFR LIAESITKFS DIYVKVENNK RKQMLELEMM RMNFHRDLEM QKRQILEKAR  360
AEIANIWRED DNWNSGSAEN LSG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	112	RRRIESNDQHRHPKKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017234662.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	A0A166ELA4	0.0	A0A166ELA4_DAUCS; Uncharacterized protein
STRING	Solyc12g043090.1.1	1e-112	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7230	24	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	3e-51	Trihelix family protein

Link Out ? help Back to Top
Phytozome	DCAR_007559