PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007535
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CO-like
Protein Properties Length: 394aa    MW: 43775 Da    PI: 5.4397
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007535genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.87.9e-071353438
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                 r+C+++ + + +l+C+ +  +lC  C   +H g       H+
  DCAR_007535 13 RICDTCRSAPCTLYCRADLAYLCTACDARIH-GptglasqHE 53
                 79*****************************.6566666676 PP
2zf-B_box28.43.5e-095499241
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                 + ++C+ +e+ ++ + C+ +   lC +C   +H+       H +vp
  DCAR_007535 54 RVWICEACERAPAAFICKADAASLCTTCDADIHSAnplasrHHRVP 99
                 5689*****************************6689999977766 PP
3CCT70.15.4e-24324367144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k+a
  DCAR_007535 324 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRA 367
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.0111057IPR000315B-box-type zinc finger
SMARTSM003364.1E-71057IPR000315B-box-type zinc finger
CDDcd000211.19E-81357No hitNo description
PROSITE profilePS5011910.75153100IPR000315B-box-type zinc finger
PfamPF006438.7E-75499IPR000315B-box-type zinc finger
CDDcd000213.34E-856100No hitNo description
SMARTSM003368.8E-958100IPR000315B-box-type zinc finger
PfamPF062039.7E-18324366IPR010402CCT domain
PROSITE profilePS5101716.648324366IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MFKEEKNGST WARICDTCRS APCTLYCRAD LAYLCTACDA RIHGPTGLAS QHERVWICEA  60
CERAPAAFIC KADAASLCTT CDADIHSANP LASRHHRVPV APIPGCVYGP QTAKGAILGL  120
GTQLDNGYLT PETDEVIADD DDESEAASWL LIHPAKDNPQ QMTNGLLFGG EAVDEYLDFV  180
DFNSCQDNQF TAQQQYDVPQ KAYGEQYNEQ QKYYVPQKSY AGDSVVPVQN QQMKTHQFQP  240
PQQAQPKQNQ NFQLDVEYET SNPGYCYPTS LSHSVSVSSM DVGVVPESTM MDISATHPRP  300
SKGTIDLFSS QPVQMPTPLT PLDREARVLR YREKKKTRKF EKTIRYASRK AYAETRPRIK  360
GRFAKRADAD TEVDQMFSST LMAETGYGIV PSF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231361.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
RefseqXP_017231417.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-132COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A166EKS20.0A0A166EKS2_DAUCS; Uncharacterized protein
STRINGXP_010029446.11e-165(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-104CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]