PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007515
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 360aa    MW: 40276.8 Da    PI: 7.5347
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007515genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.2e-09198245455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  DCAR_007515 198 SHSLAERVRREKISERMKLLQALVPGC----DKVTGKALMLDEIINYVQSLQ 245
                  8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.04E-10192249No hitNo description
SuperFamilySSF474591.11E-16192261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-16194260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-6198245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAAFSYDKHH PFLVDSSSSL FLFPNTTPPA NPSLATITHN HNSTHMSCFL EQSIYNNYSP  60
CPSPHHHHPF SDQPDPTVDL SCSVNISSTT KVSNCSNNSS SSALTAQHQP VINPMDKRTN  120
TFQESHLKQK GKKQRKENTS SIDEACMNTI SEEKSTNKKK SRRSGEGDKK RNGEEIERNE  180
PPSGYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQAL VPGCDKVTGK ALMLDEIINY  240
VQSLQNQVEF LSMKIASVNP MLYDFGVDLD AYMVKPESSN LEATQQTDVH PQAHAQATNM  300
FNTSGGYSVM DTSTLHQLHQ VQMSNIMSQP QLLWDVDGNR HRNINHPGFT NNLSSYHLN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232714.10.0PREDICTED: transcription factor bHLH137-like isoform X3
TrEMBLA0A166EKB80.0A0A166EKB8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-56bHLH family protein