PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007382
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 676aa    MW: 73307 Da    PI: 5.7483
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007382genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06265285526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C+ Gd C +aHg
  DCAR_007382 265 PCPEFRK-GACRQGDACEYAHG 285
                  8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.1E-1416164IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.55E-1458138IPR020683Ankyrin repeat-containing domain
SMARTSM002480.056191IPR002110Ankyrin repeat
PROSITE profilePS5029715.72461136IPR020683Ankyrin repeat-containing domain
PfamPF136371.8E-862120No hitNo description
CDDcd002043.58E-663167No hitNo description
SMARTSM002482.1E-496128IPR002110Ankyrin repeat
PROSITE profilePS5008811.64896131IPR002110Ankyrin repeat
SMARTSM003567.1E-5260286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.455265287IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.075295319IPR000571Zinc finger, CCCH-type
SMARTSM0035645295318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MGVGEFQEQE RVADGLSGLL ELAAADDLIG FKTAVEEGGL DVDGFGLWYG RRVGSKKIGL  60
EERTPLMIAS MFGSTRVLVY ILETGCVDIN RACGSDGATA LHCAVFGGSA VVVDVVKLLL  120
DASADVNCVD VEGNRPSDLI VPFVSSAYHL KRKTLELLLN GYTDSDEACV LGDNIAKKME  180
GQFVEEVSSL QDPKDGPERK DYPVDLSLPD IKNGIYGSDE FRMYTFKIKP CSRAYSHDWT  240
ECPFAHPGEN ARRRDPRKFH YSCVPCPEFR KGACRQGDAC EYAHGIFECW LHPAQYRTRL  300
CKDEIGCNRK VCFFAHKPEE LRPLYASSGS AVPSSLDFLT MSPLALGSPS LMMSPSSTPP  360
MTPSGPSSPM AGSLWSNQSN FAPPTLNLSG SRLRTTLSAR DMDMEADFLG VENHRRRQQQ  420
LFDELSGLSS PTAWNNSFSS SAAFAASQGD WNGEPNRFLG VKPTNLDDVF GSHDPAVLSH  480
LQGLSLDAGT TQLQSPTGTP LRHSMNQQLR SSYPSNLSSS PARTSQSYGI DQAQAAAAAS  540
FVTARSSAFA KRSQSFIDRS AVTHHSGISS SSAAGMSDWG SPNGKLEWGI QKEELNKLRK  600
SASFGLRSSG GSYGAPAASI PSPTKEHDSW PRVKDVPAEK SGQSHTEERN LTNGGLEMLP  660
QWVEQFYMDQ EQLVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233871.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
TrEMBLA0A161X6F80.0A0A161X6F8_DAUCS; Uncharacterized protein
STRINGPOPTR_0001s25960.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-159C3H family protein