PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_007382 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 676aa MW: 73307 Da PI: 5.7483 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.8 | 1.4e-06 | 265 | 285 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg DCAR_007382 265 PCPEFRK-GACRQGDACEYAHG 285 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 3.1E-14 | 16 | 164 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.55E-14 | 58 | 138 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.05 | 61 | 91 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 15.724 | 61 | 136 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF13637 | 1.8E-8 | 62 | 120 | No hit | No description |
CDD | cd00204 | 3.58E-6 | 63 | 167 | No hit | No description |
SMART | SM00248 | 2.1E-4 | 96 | 128 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.648 | 96 | 131 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 7.1E-5 | 260 | 286 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.455 | 265 | 287 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.075 | 295 | 319 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 45 | 295 | 318 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MGVGEFQEQE RVADGLSGLL ELAAADDLIG FKTAVEEGGL DVDGFGLWYG RRVGSKKIGL 60 EERTPLMIAS MFGSTRVLVY ILETGCVDIN RACGSDGATA LHCAVFGGSA VVVDVVKLLL 120 DASADVNCVD VEGNRPSDLI VPFVSSAYHL KRKTLELLLN GYTDSDEACV LGDNIAKKME 180 GQFVEEVSSL QDPKDGPERK DYPVDLSLPD IKNGIYGSDE FRMYTFKIKP CSRAYSHDWT 240 ECPFAHPGEN ARRRDPRKFH YSCVPCPEFR KGACRQGDAC EYAHGIFECW LHPAQYRTRL 300 CKDEIGCNRK VCFFAHKPEE LRPLYASSGS AVPSSLDFLT MSPLALGSPS LMMSPSSTPP 360 MTPSGPSSPM AGSLWSNQSN FAPPTLNLSG SRLRTTLSAR DMDMEADFLG VENHRRRQQQ 420 LFDELSGLSS PTAWNNSFSS SAAFAASQGD WNGEPNRFLG VKPTNLDDVF GSHDPAVLSH 480 LQGLSLDAGT TQLQSPTGTP LRHSMNQQLR SSYPSNLSSS PARTSQSYGI DQAQAAAAAS 540 FVTARSSAFA KRSQSFIDRS AVTHHSGISS SSAAGMSDWG SPNGKLEWGI QKEELNKLRK 600 SASFGLRSSG GSYGAPAASI PSPTKEHDSW PRVKDVPAEK SGQSHTEERN LTNGGLEMLP 660 QWVEQFYMDQ EQLVA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233871.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66-like | ||||
TrEMBL | A0A161X6F8 | 0.0 | A0A161X6F8_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0001s25960.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2558 | 22 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 1e-159 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_007382 |