PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007271
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 326aa    MW: 36762.3 Da    PI: 8.3378
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007271genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.43.2e-15248272226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ktelC+ +++tG C+yG++C+FaHg
  DCAR_007271 248 KTELCNKWQQTGACPYGSNCQFAHG 272
                  9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.4E-18240279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-11244278IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7246273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.108247274IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-12248272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.87E-8280314IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-10280313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313284312IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4284311IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MQKEKPASHC RFHDHPSLCS PYFCQSDSYD YPSLYPNLSS HVQFSPYSPG SIDYSYPPPY  60
LFTDQQEDLK KQKSWCLSRL CETTKEAEAL RQENINLQIA NNELNKQFNN LLMLQSSSTL  120
QNSRVAPVHE YVSAAPEPAA YPSSSLIDGF GRINIGGMAE KQVARNQEPD NSENLDVNRV  180
SLPKSISVRS NGYLKTVQDV GSSSRGGGQV HVPNRIKPVK AAQRVYVRGG RREEKPLELQ  240
VYNQGVTKTE LCNKWQQTGA CPYGSNCQFA HGIEELRPVL RHPRYKTEVC FMVLNGEPCP  300
YGHRCHFRHS LTDQEKLIAH QSKTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A3e-182483131176Tristetraproline
1rgo_A3e-18248310567Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231507.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
TrEMBLA0A166EDW70.0A0A166EDW7_DAUCS; Uncharacterized protein
STRINGVIT_01s0011g04260.t018e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-68C3H family protein