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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
DCAR_007178 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
| Family |
C2H2 |
| Protein Properties |
Length: 376aa MW: 43501.8 Da PI: 9.2684 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| DCAR_007178 | genome | ARS-USDA | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 18.9 | 4e-06 | 60 | 80 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C dCg sF+ + +Lk+H ++H
DCAR_007178 60 CDDCGLSFRKPAHLKQHVQSH 80
******************999 PP
|
| 2 | zf-C2H2 | 19.1 | 3.6e-06 | 101 | 125 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
++Cp dC+ +++rk++L+rH+ H
DCAR_007178 101 FTCPidDCNSRYTRKDHLNRHLLQH 125
89*******************9887 PP
|
| 3 | zf-C2H2 | 21.3 | 6.9e-07 | 130 | 155 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
++Cp +C+++Fs++ n+krH ++ H
DCAR_007178 130 FTCPstYCNRRFSNQGNMKRHVKKfH 155
89*********************999 PP
|
| 4 | zf-C2H2 | 19.3 | 3e-06 | 169 | 193 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
+ Cp Cgk+F+ s Lk+H +H
DCAR_007178 169 HICPepGCGKVFKYASKLKKHEDSH 193
679999***************9888 PP
|
| 5 | zf-C2H2 | 17.3 | 1.4e-05 | 260 | 284 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23
kC+ dC +Fs+ksnL++Hi+ H
DCAR_007178 260 KCSfnDCLHTFSSKSNLNQHIKAvH 284
79999****************9888 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF57667 | 7.71E-7 | 12 | 80 | No hit | No description |
| PROSITE profile | PS50157 | 8.559 | 14 | 41 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 32 | 14 | 36 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.159 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.099 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 9.5E-5 | 60 | 100 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 1.59E-6 | 98 | 127 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 7.9E-11 | 101 | 127 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 9.1E-4 | 101 | 125 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.785 | 101 | 130 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 103 | 125 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 1.78E-5 | 128 | 156 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 128 | 156 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.006 | 130 | 155 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 11.51 | 130 | 160 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 132 | 155 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 1.8E-8 | 166 | 193 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 8.64E-5 | 167 | 194 | No hit | No description |
| PROSITE profile | PS50157 | 10.388 | 169 | 198 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0011 | 169 | 193 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 171 | 193 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 5.2 | 201 | 226 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 203 | 226 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 21 | 229 | 250 | IPR015880 | Zinc finger, C2H2-like |
| SuperFamily | SSF57667 | 1.51E-7 | 241 | 297 | No hit | No description |
| PROSITE profile | PS50157 | 12.424 | 259 | 289 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.02 | 259 | 284 | IPR015880 | Zinc finger, C2H2-like |
| Gene3D | G3DSA:3.30.160.60 | 7.2E-5 | 260 | 287 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE pattern | PS00028 | 0 | 261 | 284 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 6.3E-4 | 288 | 302 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 12 | 290 | 316 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 292 | 316 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 376 aa
Download sequence Send
to blast |
MEKEGPIFRD IRRYYCEYCG ICRSKKSLIS SHVLSHHQDK VNEIKADDNG EKEGLKSNFC 60
DDCGLSFRKP AHLKQHVQSH SLEGYMFLQL VTNGNKLDRP FTCPIDDCNS RYTRKDHLNR 120
HLLQHQGKLF TCPSTYCNRR FSNQGNMKRH VKKFHKDSLP IKVDAPKEHI CPEPGCGKVF 180
KYASKLKKHE DSHVKLESTE AYCTDPGCMK YFTNEQCLKA HIQSCHRHIT CEFCGTKQLK 240
KNIKRHLLTH DVKPPSERMK CSFNDCLHTF SSKSNLNQHI KAVHLQQRPF VCSIHGCGMR 300
FTFKHVKDKH EKSGCHLYTQ GDFVETDEQF RSRPRGGRKR VCPSIETFTR KRVVLPSSES 360
ASIIDQGPDY NSWLL*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
