PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_007160

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 481aa MW: 52715.2 Da PI: 8.708

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_007160	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.7e-39	121	180	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCyynny++sqPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s DCAR_007160 121 PDKLLPCPRCNSMDTKFCYYNNYNISQPRHFCKGCHRYWTAGGTMRNVPVGSGRRKSKSS 180 78999****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	118	178	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-32	123	179	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.584	125	179	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	127	163	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MSEVKDPSIK LFGKTIQRFD ALLHHDKLIS SSKDPIQNTP IHLDGKFMKT KEQGECIELI 60 DEDPRTPDSS AEELIGQETS SGMTEDPKIP NDNKETVSLE TDNKEDQSDL SNSDGKTLKK 120 PDKLLPCPRC NSMDTKFCYY NNYNISQPRH FCKGCHRYWT AGGTMRNVPV GSGRRKSKSS 180 TASLYRHILT SDAVQVARAE AANRINHPTA SVLTFGSEPP LCESMASSLF LANKSQNCVK 240 IGFNSDKQQT PVTYRNGENA DDYSCGSSST VPNPIEKGFS GGPESVLPTT VQGSPVHVPC 300 FPMPPWPYPW NNAVQWRPQT PPTTGPSVYP VSFYPPPPYW GCMVPNSWNM PYPSQQPSSP 360 NHPALRSSPN SLTLGKHSRD GGMLRPSQPG MGDPLNKKDP IRRLLVPKTL RINQSIGAAQ 420 SSKWPTLGIK TGNTDSGTGA SLTNAFLPRA TKKNHIMETS QVLQANPAAM TRSSNFHETT 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MSEVKDPSIK LFGKTIQRFD ALLHHDKLIS SSKDPIQNTP IHLDGKFMKT KEQGECIELI  60
DEDPRTPDSS AEELIGQETS SGMTEDPKIP NDNKETVSLE TDNKEDQSDL SNSDGKTLKK  120
PDKLLPCPRC NSMDTKFCYY NNYNISQPRH FCKGCHRYWT AGGTMRNVPV GSGRRKSKSS  180
TASLYRHILT SDAVQVARAE AANRINHPTA SVLTFGSEPP LCESMASSLF LANKSQNCVK  240
IGFNSDKQQT PVTYRNGENA DDYSCGSSST VPNPIEKGFS GGPESVLPTT VQGSPVHVPC  300
FPMPPWPYPW NNAVQWRPQT PPTTGPSVYP VSFYPPPPYW GCMVPNSWNM PYPSQQPSSP  360
NHPALRSSPN SLTLGKHSRD GGMLRPSQPG MGDPLNKKDP IRRLLVPKTL RINQSIGAAQ  420
SSKWPTLGIK TGNTDSGTGA SLTNAFLPRA TKKNHIMETS QVLQANPAAM TRSSNFHETT  480
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017232384.1	0.0	PREDICTED: cyclic dof factor 2
TrEMBL	A0A162AV47	0.0	A0A162AV47_DAUCS; Uncharacterized protein
STRING	VIT_01s0026g02580.t01	1e-144	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	8e-70	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	DCAR_007160