PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_007150

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 391aa MW: 44308.8 Da PI: 5.4563

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_007150	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.3	5.2e-52	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++a+ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ ++ DCAR_007150 16 MLPGFRFHPTDEELVGFYLKRKIQKRPLSI-ELIKQLDIYKYDPWDLPKFATAGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRAIYSSeGS 112 579*************************.89***********8888899***********************************9566 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +glkk+Lvfy+gra kg ktdW+mhe+rl DCAR_007150 113 KCIGLKKSLVFYTGRAAKGMKTDWMMHEFRL 143 77*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.02E-57	15	172	IPR003441	NAC domain
PROSITE profile	PS51005	56.488	16	172	IPR003441	NAC domain
Pfam	PF02365	1.1E-25	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MGDNHSDAVD KVDEFMLPGF RFHPTDEELV GFYLKRKIQK RPLSIELIKQ LDIYKYDPWD 60 LPKFATAGEK EWYFYCPRDR KYRNSARPNR VTGAGFWKAT GTDRAIYSSE GSKCIGLKKS 120 LVFYTGRAAK GMKTDWMMHE FRLPSLTNSV PSKDKNIIPL NDAWAICRIF KKTNSNAHKA 180 PLHTWIPPDL HESITSSEML SFPHFNSAQF SSETKTRSSH IQDPSNMTSF SPSFDFSSDY 240 KPYIQMTSGY PYMSPQTIDN ATICTIDTAN LPFNLSSSIF KEFDNVGASE CPDYSTIQDR 300 YVNKEALISL PPQVQENTGE GGEASSMSLM EEPTSNVSFL DDEWGSLIRS SIGFPYTLPM 360 NMQESWEFNL LCDTSLDPTD QISCAYSTNK *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MGDNHSDAVD KVDEFMLPGF RFHPTDEELV GFYLKRKIQK RPLSIELIKQ LDIYKYDPWD  60
LPKFATAGEK EWYFYCPRDR KYRNSARPNR VTGAGFWKAT GTDRAIYSSE GSKCIGLKKS  120
LVFYTGRAAK GMKTDWMMHE FRLPSLTNSV PSKDKNIIPL NDAWAICRIF KKTNSNAHKA  180
PLHTWIPPDL HESITSSEML SFPHFNSAQF SSETKTRSSH IQDPSNMTSF SPSFDFSSDY  240
KPYIQMTSGY PYMSPQTIDN ATICTIDTAN LPFNLSSSIF KEFDNVGASE CPDYSTIQDR  300
YVNKEALISL PPQVQENTGE GGEASSMSLM EEPTSNVSFL DDEWGSLIRS SIGFPYTLPM  360
NMQESWEFNL LCDTSLDPTD QISCAYSTNK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	1	175	4	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	1	175	4	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	1	175	4	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	1	175	4	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	1	175	7	171	NAC domain-containing protein 19
3swm_B	1e-55	1	175	7	171	NAC domain-containing protein 19
3swm_C	1e-55	1	175	7	171	NAC domain-containing protein 19
3swm_D	1e-55	1	175	7	171	NAC domain-containing protein 19
3swp_A	1e-55	1	175	7	171	NAC domain-containing protein 19
3swp_B	1e-55	1	175	7	171	NAC domain-containing protein 19
3swp_C	1e-55	1	175	7	171	NAC domain-containing protein 19
3swp_D	1e-55	1	175	7	171	NAC domain-containing protein 19
4dul_A	1e-55	1	175	4	168	NAC domain-containing protein 19
4dul_B	1e-55	1	175	4	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017233590.1	0.0	PREDICTED: putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	3e-97	FEZ_ARATH; Protein FEZ
TrEMBL	A0A162AV36	0.0	A0A162AV36_DAUCS; Uncharacterized protein
STRING	VIT_01s0026g02360.t01	1e-129	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	2e-99	NAC family protein

Link Out ? help Back to Top
Phytozome	DCAR_007150

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]