PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_007143 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | bHLH | ||||||||
Protein Properties | Length: 96aa MW: 10293.6 Da PI: 9.5682 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.8 | 1.4e-06 | 21 | 62 | 15 | 54 |
HHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54 +i + ++L++l+P+ a ++s +s + +L++++e+I++L DCAR_007143 21 QIADLVSKLQQLIPEiANrPTGSAQVSASKVLQETCEHIRNL 62 6888899********9987788888***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.293 | 6 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-7 | 21 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.64E-7 | 21 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MSSRRSRSGQ SSGASRISDA QIADLVSKLQ QLIPEIANRP TGSAQVSASK VLQETCEHIR 60 NLRKEVSDLS DRLSQLLESI DSNSAQAAVI RSLLM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017234187.1 | 1e-59 | PREDICTED: transcription factor PRE6-like | ||||
Swissprot | Q9LJX1 | 6e-34 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | A0A166EAJ1 | 2e-58 | A0A166EAJ1_DAUCS; Uncharacterized protein | ||||
STRING | PGSC0003DMT400017748 | 2e-34 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA353 | 24 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 2e-30 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_007143 |