PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007136
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 501aa    MW: 54366.6 Da    PI: 6.3941
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007136genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.53.1e-24185240159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK+ kg+++pr+YYrCt++ +Cpv    +r++e+ +v+++tYeg+Hnh+
  DCAR_007136 185 MNDGCQWRKYGQKKAKGNPCPRAYYRCTMSpSCPV----QRCHENMSVLITTYEGTHNHQ 240
                  58***************************99**95....67999999************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-24170242IPR003657WRKY domain
PROSITE profilePS5081121.574180242IPR003657WRKY domain
SuperFamilySSF1182908.5E-22180242IPR003657WRKY domain
SMARTSM007745.1E-28185241IPR003657WRKY domain
PfamPF031062.2E-20186240IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MDQVREENGR LKLVLSNIMK DYKTLQQQID NITRTDHHQQ QEEDNRSCDD KDAADSSQEE  60
DDHDELVSLS LGRSSSLEAK NKDLAVHKVI KKDEDGDDDM ERGLALRLDG RSYDFSGDDE  120
IASGVSRNQS SREVEGDGAS DQTTRYPRKD SKTMSTSGDD ENVLQQSPAK KARVSVRAIC  180
SGPTMNDGCQ WRKYGQKKAK GNPCPRAYYR CTMSPSCPVQ RCHENMSVLI TTYEGTHNHQ  240
LPPAATAMAS TTSAAVSMLK ASSSTSTSQP SFSFPSTTST TINNTPPFYF PNTTLSTLQS  300
HPTITLDLTT PSASSRYNNY SSTFFPTPQP IAYSPPACLN FSAPSLSSSP SFEHWRNHNV  360
QSSPSTFSTT QLPLPSKTPF YQPYSYSIPN KNTSDQTQHQ PQFSTEKIAA ATKEITSNPS  420
FQSALAAAIS SIVGRGTGGF AGSMESHSGA ASASSLLNAI STAESSISEQ GEKNLRFELS  480
PLASSKGPLA GFTHQGEHNK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-161852441476WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234251.10.0PREDICTED: probable WRKY transcription factor 36
TrEMBLA0A161XH190.0A0A161XH19_DAUCS; Uncharacterized protein
STRINGXP_008221663.17e-90(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19452464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.12e-51WRKY DNA-binding protein 61