PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_006979

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 263aa MW: 28935.9 Da PI: 8.9458

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_006979	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	5.1e-39	26	85	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+ l+cprC+stntkfCy+nnysl+qPr+fCkaCrryWt+GG+lrnvPvGgg+rknk+s+ DCAR_006979 26 EAPLNCPRCHSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGSLRNVPVGGGSRKNKRSN 85 67899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-26	26	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.8E-33	28	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.208	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MDTADQWPQE GAPPSDQKKV KPQKDEAPLN CPRCHSTNTK FCYFNNYSLT QPRHFCKACR 60 RYWTRGGSLR NVPVGGGSRK NKRSNSLVTK PTGSQDDHLS SHFSFQNPSN LNLAFSQDYN 120 TLEASRLNNK DINNNIIQLN LNSSYSTSSP STSASLSAME LLKLNSTGFS HTFMPVVQNP 180 GMMMQYSSGF QFQEFNKPQL GFGANNQENI NMSGAGEQRL NFPFGGASSK HHTSANGVDS 240 EDNKVEGNPG VYWNGMPSGG SW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017232392.1	0.0	PREDICTED: dof zinc finger protein DOF4.6
TrEMBL	A0A166E609	0.0	A0A166E609_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-35	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	DCAR_006979