PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006833
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 273aa    MW: 30739.7 Da    PI: 8.1749
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006833genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023628123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C++sF +   L  H+r+H
  DCAR_006833  6 HQCQLCTRSFINGKALGGHMRSH 28
                 79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.84E-7528No hitNo description
PROSITE profilePS5015710.034633IPR007087Zinc finger, C2H2
SMARTSM003550.047628IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-6628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576671.84E-7126153No hitNo description
PfamPF139128.1E-10130155IPR007087Zinc finger, C2H2
SMARTSM003550.34131153IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45131158IPR007087Zinc finger, C2H2
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
SMARTSM003550.25187209IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.016187209IPR007087Zinc finger, C2H2
PfamPF139125.4E-11187209IPR007087Zinc finger, C2H2
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MERQLHQCQL CTRSFINGKA LGGHMRSHLF PLPLPPKDPQ PQDRESETES RNPTRKRSIR  60
TRRTIKVVEL ESISKKPSST ESGPELEVVS SVCDDTTSDC FEDEEDVASC LMMMARDKWR  120
FNSVSQTRER YQCESCSKVF GSFQALGGHR TSHKKVKKRL DDGEKSLEEK PRKKMIGNKN  180
VVKKLMHECP VCFKVFGSGQ ALGGHKRSHF LGSSSTSAST TSSTSPTKHP LLDDEEHGKN  240
ENENFRFSFI DLNLPAPMEF EDSSPLEPLH LV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234061.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A166E2A60.0A0A166E2A6_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.16e-45C2H2-like zinc finger protein