PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006798 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 269aa MW: 30371 Da PI: 4.6028 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.6 | 7.9e-19 | 29 | 77 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien ++qvtfskRr+g++ KA+EL+vL++ae+++++ s ++y + DCAR_006798 29 KKIENPGRKQVTFSKRRAGLFNKASELCVLTGAEILILVQSVGSRVYAF 77 68**************************************999999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.1E-25 | 21 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.156 | 21 | 81 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-22 | 22 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-15 | 23 | 43 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.2E-18 | 30 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-15 | 43 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-15 | 58 | 79 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MTMKKTGCSS SQETVPMKKT RGRQKIEIKK IENPGRKQVT FSKRRAGLFN KASELCVLTG 60 AEILILVQSV GSRVYAFGHP NVDSLIDTYL GNNVSNSPPV DENSACMYEE YNKKYLEIAK 120 EMEVEKIKSN NVEESGEFWW QRSFEDLEMD ELDCYIKSME ELKNNATRRA DELRNSVEGL 180 LLDDQIMLPN LDQFVPHNVG FADDSLMMQP VNYDPSGFNG YSFVNGELVS DSHDYFKNHG 240 GDDLQVQTDY GALGARDDLY YGPDHIGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mnm_A | 2e-14 | 23 | 94 | 18 | 89 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
1mnm_B | 2e-14 | 23 | 94 | 18 | 89 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233553.1 | 3e-85 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A166E1J6 | 0.0 | A0A166E1J6_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-34 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006798 |