PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_006683

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 497aa MW: 53512.5 Da PI: 6.9189

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_006683	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.5	1.7e-40	119	223	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ DCAR_006683 119 TVAKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksaphtfh 216 678******************************************************************99988888888888666665544444444 PP TCP 89 ......k 89 + DCAR_006683 217 galaltH 223 3333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.8E-39	124	279	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.496	125	179	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MKYQTMDLTD SQTNNKNQTT ATSSNAAAQH HQQHHHSQYD NRSSSFNMDP TSIQPNEQTP 60 PNQTQTPTPH PHTPSSSAGA GAGASTSTPT AQPLTIDASL AISTTRSDAI TDTSKKPTTV 120 AKRSTKDRHT KVDGRGRRIR MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIIAAT 180 GTGTIPANFS TLNVSLRSSG STLSAPPSKS APHTFHGALA LTHHPYEEGF SHMLGFHHPH 240 HQTPHILTPD QMAGISVAAE SADNEAGNDD YLRKRFREDL FKEEGQQQQG QGGEVDGESS 300 SPSNKHFKGL PKQQEAGSSR HHTANMVPAT AMWAVAPAAS SGSGNTFWML PFTASAGSGV 360 ATATGGGAQS DQPQMWPFAT PQPSTIQAPL NFMPRFNVPG NIEFQGGRAN PLQLGSMLMQ 420 QQQQQQQPSQ HLGLGMNDTN LGMMAALNAY PRGGFNMNLD QNHPMHHQQQ QQQHQQQQQH 480 QHSQADDSGD EDPNSS*

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MKYQTMDLTD SQTNNKNQTT ATSSNAAAQH HQQHHHSQYD NRSSSFNMDP TSIQPNEQTP  60
PNQTQTPTPH PHTPSSSAGA GAGASTSTPT AQPLTIDASL AISTTRSDAI TDTSKKPTTV  120
AKRSTKDRHT KVDGRGRRIR MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIIAAT  180
GTGTIPANFS TLNVSLRSSG STLSAPPSKS APHTFHGALA LTHHPYEEGF SHMLGFHHPH  240
HQTPHILTPD QMAGISVAAE SADNEAGNDD YLRKRFREDL FKEEGQQQQG QGGEVDGESS  300
SPSNKHFKGL PKQQEAGSSR HHTANMVPAT AMWAVAPAAS SGSGNTFWML PFTASAGSGV  360
ATATGGGAQS DQPQMWPFAT PQPSTIQAPL NFMPRFNVPG NIEFQGGRAN PLQLGSMLMQ  420
QQQQQQQPSQ HLGLGMNDTN LGMMAALNAY PRGGFNMNLD QNHPMHHQQQ QQQHQQQQQH  480
QHSQADDSGD EDPNSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017231174.1	0.0	PREDICTED: transcription factor TCP8-like
TrEMBL	A0A166DYP7	0.0	A0A166DYP7_DAUCS; Uncharacterized protein
STRING	EOX97160	1e-159	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11484	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	4e-63	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_006683