PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006551 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | bHLH | ||||||||
Protein Properties | Length: 483aa MW: 53751.6 Da PI: 6.5136 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.9 | 3.2e-12 | 299 | 345 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er RR+++N++f Lr+++P+ +++Ka+ L Av YIk+L DCAR_006551 299 QNHVEAERLRREKLNHRFYALRSVVPNV-----SRMDKASLLGDAVTYIKEL 345 68*************************6.....4****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 6.6E-41 | 24 | 206 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.793 | 296 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-17 | 299 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-16 | 299 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.50E-14 | 299 | 349 | No hit | No description |
Pfam | PF00010 | 8.7E-10 | 299 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.4E-16 | 302 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MEDIISSSSS SSFLCHGNPS PTIQQRLQFI LQNRPEWWMY YIFWQTSKDN ATDRLVLSWG 60 DGQFRGSKDS MLKPTNASNV GFELEQRKVA KGIQSLFTDT ITSGVDGVVV DTEFPDSEWF 120 FMVSATRSFL AGDDNIVGRA FSSGTYVWLA GDEELQFNAC DRAKEAYLQG VKTLVCISTP 180 CGIIELGSSY AIKEDWGLVH LAKSVFCPDN TNMNMSTSPN QSLSLLDINA GYPREHIKST 240 NSGGDEDIAK QTKMTRSSSY LGNSGFESPL DIHHDTTMCT RSFNKRGRRT VASGRELAQN 300 HVEAERLRRE KLNHRFYALR SVVPNVSRMD KASLLGDAVT YIKELKSKVD ELDGKLREEV 360 RKSKYTTDAV YHDTCATQST STTTHAYNAA AARSTVLNYG PIQMEVDIKI LGSQAMIHVQ 420 SSDVNYPWAR LMDALRMLEF RVHHASVSSV KDLILQDIVI KVPDGLTNEE GLKSAILATL 480 QI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-30 | 22 | 206 | 8 | 192 | Transcription factor MYC3 |
4rqw_B | 2e-30 | 22 | 206 | 8 | 192 | Transcription factor MYC3 |
4rs9_A | 2e-30 | 22 | 206 | 8 | 192 | Transcription factor MYC3 |
4yz6_A | 2e-30 | 22 | 206 | 8 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017232647.1 | 0.0 | PREDICTED: transcription factor MYC2-like | ||||
TrEMBL | A0A166DUY4 | 0.0 | A0A166DUY4_DAUCS; Uncharacterized protein | ||||
STRING | cassava4.1_024442m | 1e-140 | (Manihot esculenta) | ||||
STRING | XP_006439218.1 | 1e-140 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 3e-78 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006551 |