PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_006497

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 340aa MW: 36932.7 Da PI: 7.2217

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_006497	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.8e-39	47	105	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rkn+k+ DCAR_006497 47 QQIINCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNNKR 105 7899****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-24	40	98	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.3E-33	48	104	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.807	50	104	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MDTAQWPQEI VVKPMEEIIV TNTQKPCLTS SSSESCKKAK TTPKEVQQII NCPRCNSTNT 60 KFCYYNNYSL SQPRYFCKTC RRYWTEGGSL RNIPVGGGSR KNNKRSLNSS PSRSNSSASS 120 KKIIVPSDNQ DRLVAVPVSN SCRNADKNVG NVYDHHQDLN LGFAHEPSDF KALSQLIQVP 180 NFDSIGSAMG NTFSASSPTN STTTHHLSAM ELLTSRGLGN SFMPMLSNMS SDNNIQSSNA 240 FLGFPLSTAD QYHQFMKPGS GLSFSLDNEL EISTNTGSTG TGRHLFPFED LKLQAPAGNA 300 TNAEDHASDD HRDSGRDQGG DEQSNGFWNG MLGTGGGSW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017232251.1	0.0	PREDICTED: dof zinc finger protein DOF4.6
TrEMBL	A0A166DTJ7	0.0	A0A166DTJ7_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64620.1	2e-51	Dof family protein

Link Out ? help Back to Top
Phytozome	DCAR_006497