PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006452
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 1669aa    MW: 181474 Da    PI: 6.5769
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006452genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-09751792346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT eE e+++d    +G++ +++Ia+ +  ++t  +c+++++k
      DCAR_006452 751 PWTSEEKEIFLDKLSVFGKD-FRKIAAFLD-NKTTADCVEFYYK 792
                      8*****************99.*********.***********98 PP
2Myb_DNA-binding31.34.9e-109681007445
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding    4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                       WT eE   +++av  +G++ ++ I++++g +++ +qck ++ 
      DCAR_006452  968 WTDEERSVFIEAVSSYGKD-FAMISQCVG-TKSSNQCKVFFS 1007
                       *****************99.*********.********8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.96E-14735796IPR009057Homeodomain-like
PROSITE profilePS5129314.593747798IPR017884SANT domain
SMARTSM007178.1E-9748796IPR001005SANT/Myb domain
PfamPF002491.5E-6750792IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-5751792IPR009057Homeodomain-like
PROSITE profilePS5129311.6729631014IPR017884SANT domain
SMARTSM007172.4E-89641012IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-69651008IPR009057Homeodomain-like
SuperFamilySSF466891.01E-109651014IPR009057Homeodomain-like
PfamPF002495.4E-89671007IPR001005SANT/Myb domain
CDDcd001672.42E-79681006No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1669 aa     Download sequence    Send to blast
MPPELLPRDR KELFRERKNE RSLSEGGGSN RWRDVKRPGG YVRGFPMLSE ESCRGSGPSR  60
SNDKMLDDES GRSLGKYGRS GRENRGGPFS QRGLNRHSSD AAANSSLNGP IMQFNVNDKR  120
LVDDVLTCNR IDLKDTPDKS GGVSGPCTGQ KLDGENSLSS IDWKTLKWTR SGSLSSRGSG  180
LSHSSSSKSM GGDSTETKSN LHPLNVSPLE SPSCDAAAFA SPAAGANSAA PTEETSSRKK  240
PRLGWGEGLA KFEKKRVDSP SDTAVKIGMV LSENNTENGR SHVINVPDRS PRLAGLLSCT  300
SPATPSVACS SSVGLNDKFL GKAVNVETAD VCGSPLESLN QCEDLSCNPV TLEDTLVANL  360
YQINELLKCN DQVSTDSDFV KSTVMNKLLV LKADVSKRIE ATESEIDSLE NELKLLINDT  420
GSVHPRPASS SSLPVVCFNK PSEVDTASNL IPRPDPLQTS GDLLKDRTYG GSEGELAECK  480
DEDIDSPGTA TSKFCEPMYS GKPVSQADIP NLVESSLNVD ACRNGSEVKS LVYAVEEEGT  540
DTRPSCLVDP DNVGQTENVY DLMMASNKEA AHRASEVFSK LVPDSSSSFD IQIDDNSPCL  600
KVDPSVEEKF ARRKRFMKFK ERVITLKFRV FQHLWKEDLR LLSIKRSRTK PQKKFEFGTR  660
MLPCGYQKHR ASIRSRFSSP AGNLSLVPTT QVIDFASKLL EDSRTKVYRS ALNMPSLILD  720
NKEKIMSRFI SSNRLVEDPC SLETERCIIN PWTSEEKEIF LDKLSVFGKD FRKIAAFLDN  780
KTTADCVEFY YKNHKSECFQ KAKKKPEFAE KGKSFSKNTY LVTSGKRWNR DDNVASLDLL  840
GAASAIAAKD DGLKPQKCAP RLIFSSCNSR TARGDDVLSK RSSAINILGS ERENVAADVL  900
AGICGSLSSE AMSSCITSSV DIGEGYQERK GQPMRMKKRR SVTPEVAQDV DEGICSDESC  960
GEVDHADWTD EERSVFIEAV SSYGKDFAMI SQCVGTKSSN QCKVFFSKAR KCLGLDMMHP  1020
GSCSGVASLS DNGNGGGGAD TEDASLVETG SGVKSGSKTD EDLSLSSTKV VQTETFPAGT  1080
INIYPDADKL KEINGAGESD VIVDEPRPED AVSAGSKNKN VCLVLDNDNR FETCDGSESG  1140
AVKNLENGLG PHTKTIQNEA SEGKQAVVQE VSGFVKPSYA NLESGVYGDN SRAGEAGSEF  1200
SSHGNSFNET GLKNAPLSDG NIPVSAGTDL LATGSLPGCE KINPIILDDA PFSVLQTPVV  1260
QDPGAVQAEN SLNLTSHLVP GKISNSQLKI SVNSKDGYDK PLYQPPSRDD INPLNSLQAY  1320
PPSVPTKKAL NGDIGSCKST PSQSISKVDR NHYTDLLLPR DSYLPKSNGH GPKHNEIRSE  1380
HHLLSQDQLN DNSRRPRPRC LSDSDQPTRK GDVKLFGQIL SHPSTQQKPN SRAEEKEDRD  1440
AKHAKSSENS YNLKIPSQNL DGILTSTKFD HNSYLGLRDM GLPMRSFGFW DGNRIQTGFP  1500
SMPDSAILLA KYPAAFGNYP PSSSTVEHQH LNRITERNLN GVSVMPAREL SSSKGVADYQ  1560
AYMNRDGAKV QPFAVDLKQQ QTRYYSEMQR QRRGSEYDGL PSVQQQRAMV GLEVLGRGGI  1620
LHGGGGPRNT VSDPVAAIRR HYAGEQYNGQ IGSIIREEAW RSNGNVGR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234813.10.0PREDICTED: uncharacterized protein LOC108208794 isoform X1
TrEMBLA0A161X3U00.0A0A161X3U0_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59042332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-130MYB family protein