PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006433
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 339aa    MW: 37101.6 Da    PI: 6.6648
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006433genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17245278134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  DCAR_006433 245 CLHCEITKTPQWRAGPLGPKTLCNACGVRYKSGR 278
                  99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.0E-751326IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.319239275IPR000679Zinc finger, GATA-type
SMARTSM004012.9E-15239289IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-14243302No hitNo description
Gene3DG3DSA:3.30.50.102.9E-14243276IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.31E-14244291No hitNo description
PfamPF003202.4E-15245278IPR000679Zinc finger, GATA-type
PROSITE patternPS003440245270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMGSNYNDEM DCGSFFDHID DLIDFPSDND IGFNSGNGND FPSIWSNNVE DLPGPDPIFP  60
GMKNDSASDL SAELAVPYED IVQLEWLSTF VEDSFSGGGM TLNKENVPLN NNASQNQFRT  120
SSPVSVLESS SSSSCSDGKI VPLSPSHRGP QRARSKRPRP ANFRPRSTMQ FVTPTSSVTP  180
DNSGLVNVPM ISSESENFVE SLRIKIPKPV SENKKKQKQK PSFPSSSAEM NCSSPLQQQA  240
SVRKCLHCEI TKTPQWRAGP LGPKTLCNAC GVRYKSGRLF PEYRPAASPT FVPSLHSNSH  300
KKVVEMRIKG GEKKFMNATV PPISSEPEMI PNASLEYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KRPRP
2213220KKKQKQKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236122.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_017236123.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A166DRT10.0A0A166DRT1_DAUCS; GATA transcription factor
STRINGVIT_13s0019g04390.t011e-125(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-40GATA family protein