PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006158
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 346aa    MW: 39180.2 Da    PI: 8.3165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006158genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.9e-06186205120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++C++C+k F+r  n++ H+
  DCAR_006158 186 FVCSICNKAFNRYNNMQMHM 205
                  89*****************9 PP
2zf-C2H214.79.1e-05270292123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk F  k + ++H +++
  DCAR_006158 270 FACRKCGKAFAVKGDWRTHEKNC 292
                  78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.9E-6163209No hitNo description
Gene3DG3DSA:3.30.160.609.6E-6186205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.094186208IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.783186213IPR007087Zinc finger, C2H2
PfamPF139123.8E-4186205IPR007087Zinc finger, C2H2
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-6256290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.39E-6256290No hitNo description
SMARTSM0035554270290IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85270290IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MNTNKKLCFN GSNFIQWLKP ASPSPSPSSS SSTISTQQVN VDNIPSTLSF FKFPVYLHQA  60
HDHQEKEDDG PIRCLPLLNQ LSDHQIRPLK EESQQEIRDR EEKVTVSLHI GLPNTSSAHD  120
HSSGDNKTAL VKGLECCKEE KGGEEDIDEE DESIKRSNFI HGCNFNAKSR FWIPTPAQIL  180
VGPMQFVCSI CNKAFNRYNN MQMHMWGHGS EYRKGAESLR GTQPAAMLRL PCYCCAPMCK  240
NNINHPRAKP LKDFRTLQTH YKRKHGSKPF ACRKCGKAFA VKGDWRTHEK NCGKLWYCTC  300
GSDFKHKRSL KDHIRSFGKG HNPHPSLEGF EDEKECITGS EDETN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237016.10.0PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD11e-120ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A166DJE40.0A0A166DJE4_DAUCS; Uncharacterized protein
STRINGGorai.001G121700.11e-146(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-119WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]