PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006035
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Dof
Protein Properties Length: 326aa    MW: 35522 Da    PI: 7.0511
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006035genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.53.4e-3943103262
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                   ++a+kcprCds+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn+k+s
  DCAR_006035  43 DQQAQKCPRCDSSNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNNKRS 103
                  57899****************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-264196IPR003851Zinc finger, Dof-type
PfamPF027011.4E-3245101IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.01247101IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104985IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGMDALRAQH EQDMSSQETL ESMLVCTKAA SQVLDNKKPR PQDQQAQKCP RCDSSNTKFC  60
YYNNYSLTQP RYFCKSCRRY WTKGGTLRNV PVGGGCRKNN KRSSSSSSNS SASSKIRTVY  120
QDHPHHQLPQ PPLITSSHSH SLLPYDSTDL SLAFARLQNG QLGFDHDHNN HLSLLSNYAG  180
NEHGSFLEAM RYGNFMEAPP INNGLQNVYY GDQDHHFENA GNMSHEEMGN LPYEDLMSGG  240
GAGSSGATTT AVSVTTVKQE RPNVGGDATE GRGMVFCGYP WQIGSGGGDH GGSNVGDVDA  300
TGRQSSWING LGYSNWHGLI NSPLM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755237e-38HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231576.10.0PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBLA0A166DFK80.0A0A166DFK8_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000652712e-78(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.19e-33TARGET OF MONOPTEROS 6