PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_005976

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 331aa MW: 36108.6 Da PI: 9.8749

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_005976	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.3	1.5e-37	74	133	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+ ++cprCdst+tkfCy+nnysl+qPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+ DCAR_005976 74 EAGVNCPRCDSTQTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK 133 66799****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-33	57	126	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-31	77	131	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	77	131	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	79	115	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MAFSSSVPVY NFDQHQNWHH QLQQQQSHNN HQLQVVHQNP QLLPPLEPQV DSSGFIKPGS 60 TVDRARLAKI PLPEAGVNCP RCDSTQTKFC YFNNYSLTQP RHFCKTCRRY WTRGGALRSV 120 PVGGGCRRNK RSKSKSTKSL DNITTNSNQK EANNNNTQSP SSSADQVVAN HFNPFSSQQP 180 LNLAALHDLN NHYGAAAGST SSYGGFKTGL SDMRFQLGHH TPSSVSSSIL TGKGGQGWRL 240 PILSGFEQAP GSNLFSYQGQ ASEGASAGLV KVEEAGRGLN LSRQLLNISN QNNSNHNESN 300 QYWGSTRGGN SWTTDFTSQV TNTSSPTPFL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017232736.1	0.0	PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBL	A0A166DDT5	0.0	A0A166DDT5_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	2e-40	Dof family protein

Link Out ? help Back to Top
Phytozome	DCAR_005976