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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_005894 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C2H2 | ||||||||
Protein Properties | Length: 371aa MW: 41226.8 Da PI: 8.544 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.6 | 5.8e-07 | 138 | 161 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C++Cg+ F r+s L++H++t H DCAR_005894 138 YPCQICGEIFQRPSVLEQHQSTrH 161 99*******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.408 | 138 | 166 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 140 | 161 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 4.12E-15 | 163 | 369 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 2.2E-4 | 181 | 279 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene3D | G3DSA:3.90.228.10 | 8.1E-6 | 310 | 369 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MAIFKNFFSL FLVFLHLACF SFTSTRKRTK PTSSPLSLHS TSNSHSRLKL IKSHRAFSFL 60 KHIFSSHSSK AVAQPGRTHP NPSIGSPCSS TRSLRHSSIF SVIPNHAFAD DPEYPTRKTA 120 GSIPDSEFSS DTVRNDIYPC QICGEIFQRP SVLEQHQSTR HAVSELVDGD SGKNIVLIIF 180 NSGWTNRIKE PIIYRILKIH NGSRSLNRFE EYRESVKSKA SRHGGTCRRD ERCIADGNEL 240 LRFHCTTFLC DLGQNGNSSI CNQQYCSVCG IIKSGFSSKL DGIATVSTSW RAHVAIPEDI 300 EEEFSFLNLK RAMLVCRVIA GRVGCDPAVA DKEDPGYDSL MGPGRVGEED ELLVYNPRAV 360 LPCFVIVYTV * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017232025.1 | 0.0 | PREDICTED: uncharacterized protein LOC108206290 | ||||
TrEMBL | A0A161Y6M6 | 0.0 | A0A161Y6M6_DAUCS; Uncharacterized protein | ||||
STRING | XP_009630930.1 | 1e-150 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11834 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 1e-103 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_005894 |