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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
DCAR_005818 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family |
C3H |
Protein Properties |
Length: 362aa MW: 39279.7 Da PI: 8.7537 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
DCAR_005818 | genome | ARS-USDA | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 37.9 | 2.9e-12 | 40 | 64 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C++++rtGtCk+G +CkF+H++
DCAR_005818 40 EPECQYYLRTGTCKFGTTCKFHHPR 64
799********************96 PP
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2 | zf-CCCH | 37.8 | 3.3e-12 | 85 | 110 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C+++++tG+Ck+G +CkF H++
DCAR_005818 85 GEKECSYYLKTGQCKFGLTCKFDHPQ 110
7899********************97 PP
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3 | zf-CCCH | 38.6 | 1.8e-12 | 239 | 265 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C++++++G Ck+G++Ck++H+p
DCAR_005818 239 PGQPECKYYMKNGDCKFGSSCKYHHPP 265
5789*********************97 PP
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4 | zf-CCCH | 31.3 | 3.5e-10 | 286 | 310 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+ +C+f++++ +Ck+G +CkF H+
DCAR_005818 286 GVQPCSFYMQNKYCKFGHTCKFDHP 310
6789********************9 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 14.474 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 40 | 64 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 41 | 65 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 43 | 64 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-5 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.051 | 83 | 111 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-5 | 85 | 110 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 85 | 110 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-4 | 89 | 108 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.586 | 238 | 266 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.8E-7 | 238 | 265 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.9E-10 | 240 | 265 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 242 | 266 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 244 | 264 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.169 | 284 | 312 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-4 | 284 | 311 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-6 | 286 | 314 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-8 | 286 | 310 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-5 | 288 | 310 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 362 aa
Download sequence Send
to blast |
MLPLPRNFSL FWNSSVPHYL SKVGGVVRTA GGEFPERIGE PECQYYLRTG TCKFGTTCKF 60 HHPRNGGGSL SNVPVNIYGY PFRPGEKECS YYLKTGQCKF GLTCKFDHPQ LPGISVPASV 120 RPYYPTVQSS PPPDQYGGAT TSYRVPRPPL LPGSYVSGAY GPLLLPQGVM PIPNWSPYSG 180 PVSPVMSPGA QPSVGAASLY GVTPLSSSAP AFAGPYAPLP SSAGQSSNSR MEHQFPERPG 240 QPECKYYMKN GDCKFGSSCK YHHPPDWANL KTSCVLSHIG LPLRPGVQPC SFYMQNKYCK 300 FGHTCKFDHP VGAIRYNTST SSLNDMAVAP YMLQSTLTTT IPFPELQPEF VSGSNLDPHL 360 T*
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